Researcher Portfolio
Hacquard, S.
Dept. of Plant Microbe Interactions (Paul Schulze-Lefert), MPI for Plant Breeding Research, Max Planck Society
Researcher Profile
Position: Dept. of Plant Microbe Interactions (Paul Schulze-Lefert), MPI for Plant Breeding Research, Max Planck Society
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons104633
Publications
(1 - 25 of 42)
: Amrhein, A., Zhang, M., Hacquard, S., Heintz-Buschart, A., & Wippel, K. (2025). Pseudomonas intra-genus competition determines the protective function of synthetic bacterial communities in Arabidopsis thaliana. PLOS Biology, 23(7): e3002882. doi:10.1371/journal.pbio.3002882. [PubMan] : Chesneau, G., Herpell, J., Garrido Oter, R., & Hacquard, S. (2025). From synthetic communities to synthetic ecosystems: exploring causalities in plant-microbe-environment interactions. New Phytologist, 245(2), 496-502. doi:10.1111/nph.20250. [PubMan] : Chesneau, G., Herpell, J., Wolf, S. M., S. M., Perin, S., & Hacquard, S. (2025). MetaFlowTrain: a highly parallelized 1 and modular fluidic system for studying exometabolite-mediated inter-organismal interactions. Nature Communications, 16: 3310. doi:10.1038/s41467-025-58530-x. [PubMan] : Hacquard, S., & Martin, F. M. (2024). The chemical language of plant-microbe-microbe associations: an introduction to a Virtual Issue. New Phytologist, 244(3), 739-742. doi:10.1111/nph.20124. [PubMan] : Basak, A. K., Piasecka, A., Hucklenbroich, J., Tuerksoy, G. M., Guan, R., Zhang, P., Getzke, F., Garrido-Oter, R., Hacquard, S., Strzalka, K., Bednarek, P., Yamada, K., & Nakano, R. T. (2024). ER body-resident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly. New Phytologist, 241, 329-342. doi:10.1111/nph.19289. [PubMan] : Getzke, F., Wang, L., Chesneau, G., Böhringer, N., Mesny, F., Denissen, N., Wesseler, H., Adisa, P. T., Marner, M., Schulze-Lefert, P., Schäberle, T. F., & Hacquard, S. (2024). Physiochemical interaction between osmotic stress and a bacterial exometabolite promotes plant disease. Nature Communications, 15: 4438. doi:10.1038/s41467-024-48517-5. [PubMan] : Getzke, F., Hassani, M. A., Crüsemann, M., Malisic, M., Zhang, P., Ishigaki, Y., Böhringer, N., Jiménez Fernández, A., Wang, L., Ordon, J., Ma, K.-W., Thiergart, T., Harbort, C. J., Wesseler, H., Miyauchi, S., Garrido-Oter, R., Shirasu, K., Schäberle, T., Hacquard, S., & Schulze-Lefert, P. (2023). Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America, 120(15): e2221508120. doi:10.1073/pnas.2221508120. [PubMan] : Vannier, N., Mesny, F., Getzke, F., Chesneau, G., Dethier, L., Ordon, J., Thiergart, T., & Hacquard, S. (2023). Genome-resolved metatranscriptomics 1 reveals conserved root colonization determinants in a synthetic microbiota. Nature Communications, 14: 8274. doi:10.1038/s41467-023-43688-z. [PubMan] : Mesny, F., Hacquard, S., & Thomma, B. P. H. J. (2023). Co-evolution within the plant holobiont drives host performance. EMBO Reports, 24(9): e57455. doi:10.15252/embr.202357455. [PubMan] : Mataigne, A., Vannier, N., Vandenkoornhuyse, P., & Hacquard, S. (2022). Multi-genome metabolic modeling predicts functional inter-dependencies in the Arabidopsis root microbiome. Microbiome, 10: 217. doi:10.1186/s40168-022-01383-z. [PubMan] : Durán, P., Ellis, T. J., Thiergart, T., Agren, J., & Hacquard, S. (2022). Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations. New Phytologist, 236, 608-621. doi:10.1111/nph.18357. [PubMan] : Meyer, F., Fritz, A., Deng, Z.-L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluc, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W., Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jorgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H.-J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sorensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Haeussler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A., & McHardy, A. C. (2022). Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods, 19(4), 429-440. doi:10.1038/s41592-022-01431-4. [PubMan] : Hacquard, S., Wang, E., Slater, H., & Martin, F. (2022). Impact of global change on the plant microbiome. Special Issue, 234(6), 1907-1909. doi:10.1111/nph.18187. [PubMan] : Getzke, F., & Hacquard, S. (2022). High-Throughput Profiling of Root-Associated Microbial Communities. In Methods in Molecular Biology (pp. 325-337). US: Springer. doi:10.1007/978-1-0716-2297-1_23. [PubMan] : Wolinska, K. W., Vannier, N., Thiergart, T., Pickel, B., Gremmen, S., Piasecka, A., Piślewska-Bednarek, M., Nakano, R. T., Belkhadir, Y., Bednarek, P., & Hacquard, S. (2021). Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots. Proceedings of the National Academy of Sciences of the United States of America, 118(49): e2111521118. doi:10.1073/pnas.2111521118. [PubMan] : Mataigne, A., Vannier, N., Vandenkoornhuyse, P., & Hacquard, S. (2021). Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.780469. [PubMan] : Mesny, F., Miyauchi, S., Thiergart, T., Pickel, B., Atanasova, L., Karlsson, M., Huettel, B., Barry, K., Haridas, S., Chen, C., Bauer, D., Andreopoulos, W., Pangilinan, J., LaButti, K., Riley, R., Lipzen, A., Clum, A., Drula, E., Henrissat, B., Kohler, A., Grigoriev, I., Martin, F., & Hacquard, S. (2021). Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications, 12: 7227. doi:10.1038/s41467-021-27479-y. [PubMan] : Hou, S., Wolinska, K. W., & Hacquard, S. (2021). Microbiota-root-shoot-environment axis and stress tolerance in plants. Current Opinion in Plant Biology, 62: 102028. doi:10.1016/j.pbi.2021.102028. [PubMan] : Zhang, P., Spaepen, S., Bai, Y., Hacquard, S., & Garrido-Oter, R. (2021). Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities. ISME Communications, 73(1), 1. doi:10.1038/s43705-021-00077-1. [PubMan] : Hou, S., Thiergart, T., Vannier, N., Mesny, F., Ziegler, J., Pickel, B., & Hacquard, S. (2021). A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light. Nature Plants. doi:10.1038/s41477-021-00956-4. [PubMan] : Mayer, T., Mari, A., Almario, J., Murillo-Roos, M., Abdullah, H. S. M., Dombrowski, N., Hacquard, S., Kemen, E. M., & Agler, M. T. (2021). Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing. Molecular Ecology Resources, 21(6), 1952-1965. doi:10.1111/1755-0998.13408. [PubMan] : Schuetz, V., Frindte, K., Cui, J., Zhang, P., Hacquard, S., Schulze-Lefert, P., Knief, C., Schulz, M., & Doermann, P. (2021). Differential Impact of Plant Secondary Metabolites on the Soil Microbiota. Frontiers in Microbiology, 12: 666010. doi:10.3389/fmicb.2021.666010. [PubMan] : Thiergart, T., Durán, P., Ellis, T., Vannier, N., Garrido-Oter, R., Kemen, E., Roux, F., Alonso-Blanco, C., Agren, J., Schulze-Lefert, P., & Hacquard, S. (2020). Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature Ecology & Evolution, 4(1), 122-131. doi:10.1038/s41559-019-1063-3. [PubMan] : Guo, X., Zhang, X., Qin, Y., Liu, Y.-X., Zhang, J., Zhang, N., Wu, K., Qu, B., He, Z., Wang, X., Zhang, X., Hacquard, S., Fu, X., & Bai, Y. (2020). Host-Associated Quantitative Abundance Profiling Reveals the Microbial Load Variation of Root Microbiome. Plant Communications, 1(1): 100003. doi:10.1016/j.xplc.2019.100003. [PubMan] : Getzke, F., Thiergart, T., & Hacquard, S. (2019). Contribution of bacterial-fungal balance to plant and animal health. Current Opinion in Microbiology, 49, 66-72. doi:10.1016/j.mib.2019.10.009. [PubMan]