Researcher Portfolio
Müller, Patrick
Max Planck Institute for Developmental Biology, Max Planck Society, Müller Group, Friedrich Miescher Laboratory, Max Planck Society, Physical Chemistry, Fritz Haber Institute, Max Planck Society
Researcher Profile
Position: Physical Chemistry, Fritz Haber Institute, Max Planck Society
Position: Müller Group, Friedrich Miescher Laboratory, Max Planck Society
Position: Max Planck Institute for Developmental Biology, Max Planck Society
Additional IDs: ORCID:
https://orcid.org/0000-0002-0702-6209
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons206891
Publications
(1 - 25 of 85)
: Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallaei, A., Tesakov, I., Hatskovska, V., El-Riz, M., Maksymenko, K., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (2025). Tuning of G-CSFR signaling by de novo designed agonists. Molecular Therapy, 33(11), 5741-5759. doi:10.1016/j.ymthe.2025.08.031. [PubMan] : Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallaei, A., Tesakov, I., Hatskovska, V., El-Riz, M., Maksymenko, K., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (2025). Tuning of G-CSFR signaling by de novo designed agonists. Molecular Therapy, 33(11), 5741-5759. doi:10.1016/j.ymthe.2025.08.031. [PubMan] : Samareh, B., Klimenkova, O., Aghaallaei, N., Cheng, L., Zikic, A., Loghmani, H., Müller, P., Suttorp, M., Welte, K., Skokowa, J., & Morishima, T. (2025). NAMPT-mediated deacetylation of HCLS1 protein promotes clonogenic growth of pediatric CML cells. Experimental Hematology, 148: 104801. doi:10.1016/j.exphem.2025.104801. [PubMan] : Toulany, N., Morales-Navarrete, H., Capek, D., Grathwohl, J., Ünalan, M., & Müller, P. (2024). TwinNet: Quantitative analysis of developmental dynamics with artificial intelligence. Poster presented at 83rd Annual Meeting of the Society for Developmental Biology (SDB 2024), Atlanta, GA, USA. [PubMan] : Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallae, N., Tesakov, I., El-Riz, M., Maksymenko, K., Hatskovska, V., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (submitted). Tuning of granulopoietic signaling by de novo designed agonists. [PubMan] : Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallae, N., Tesakov, I., El-Riz, M., Maksymenko, K., Hatskovska, V., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (submitted). Tuning of granulopoietic signaling by de novo designed agonists. [PubMan] : Pomreinke, A., & Müller, P. (2024). Zebrafish nampt-a mutants are viable despite perturbed primitive hematopoiesis. Hereditas, 161(1): 14. doi:10.1186/s41065-024-00318-y. [PubMan] : Knabl, P., Schauer, A., Pomreinke, A., Zimmermann, B., Rogers, K., Čapek, D., Müller, P., & Genikhovich, G. (2024). Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator. eLife, 13: e80803. doi:10.7554/eLife.80803. [PubMan] : Toulany, N., Morales-Navarrete, H., Čapek, D., Grathwohl, J., Ünalan, M., & Müller, P. (2023). Uncovering developmental time and tempo using deep learning. Nature Methods, 20(12), 2000-2010. doi:10.1038/s41592-023-02083-8. [PubMan] : Maksymenko, K., Maurer, A., Aghaallaei, N., Barry, C., Borbarán-Bravo, N., Ullrich, T., Dijkstra, T., Hernandez-Alvarez, B., Müller, P., Lupas, A., Skokowa, J., & ElGamacy, M. (2023). The design of functional proteins using tensorized energy calculations. Cell Reports Methods, 3(8): 100560. doi:10.1016/j.crmeth.2023.100560. [PubMan] : Maksymenko, K., Maurer, A., Aghaallaei, N., Barry, C., Borbarán-Bravo, N., Ullrich, T., Dijkstra, T., Hernandez-Alvarez, B., Müller, P., Lupas, A., Skokowa, J., & ElGamacy, M. (2023). The design of functional proteins using tensorized energy calculations. Cell Reports Methods, 3(8): 100560. doi:10.1016/j.crmeth.2023.100560. [PubMan] : Müller, P. (2023). AI identifies developmental defects and drug mechanisms in embryos. Nature Methods, 20(6), 793-794. doi:10.1038/s41592-023-01872-5. [PubMan] : Čapek, D., Safroshkin, M., Morales-Navarrete, H., Toulany, N., Arutyunov, G., Kurzbach, A., Bihler, J., Hagauer, J., Kick, S., Jones, F., Jordan, B., & Müller, P. (2023). EmbryoNet: using deep learning to link embryonic phenotypes to signaling pathways. Nature Methods, 20(6), 815-823. doi:10.1038/s41592-023-01873-4. [PubMan] : Kuhn, T., Landge, A., Mörsdorf, D., Coßmann, J., Gerstenäcker, J., Čapek, D., Müller, P., & Gebhardt, J. (2022). Single-molecule tracking of Nodal and Lefty in live zebrafish embryos supports hindered diffusion model. Nature Communications, 13: 6101. doi:10.1038/s41467-022-33704-z. [PubMan] : Preiß, H., Kögler, A., Mörsdorf, D., Čapek, D., Soh, G., Rogers, K., Morales-Navarrete, H., Almuedo-Castillo, M., & Müller, P. (2022). Regulation of Nodal signaling propagation by receptor interactions and positive feedback. eLife, 11: e66397. doi:10.7554/eLife.66397. [PubMan] : Skokowa, J., Hernandez Alvarez, B., Coles, M., Ritter, M., Nasri, M., Haaf, J., Aghaallaei, N., Xu, Y., Mir, P., Krahl, A.-C., Rogers, K., Maksymenko, K., Bajoghli, B., Welte, K., Lupas, A., Müller, P., & ElGamacy, M. (2022). A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications, 13(1): 2948. doi:10.1038/s41467-022-30157-2. [PubMan] : Skokowa, J., Hernandez Alvarez, B., Coles, M., Ritter, M., Nasri, M., Haaf, J., Aghaallaei, N., Xu, Y., Mir, P., Krahl, A.-C., Rogers, K., Maksymenko, K., Bajoghli, B., Welte, K., Lupas, A., Müller, P., & ElGamacy, M. (2022). A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications, 13(1): 2948. doi:10.1038/s41467-022-30157-2. [PubMan] : Maksymenko, K., Hernandez Alvarez, B., Ullrich, T., Müller, P., Skokowa, J., Lupas, A., & ElGamacy, M. (2022). Damietta: A Tensorised Protein Design Engine, and Its Application in Therapeutic Protein Design. In Advances in Protein Folding, Evolution and Design (APFED 2022) (pp. 67). [PubMan] : Maksymenko, K., Hernandez Alvarez, B., Ullrich, T., Müller, P., Skokowa, J., Lupas, A., & ElGamacy, M. (2022). Damietta: A Tensorised Protein Design Engine, and Its Application in Therapeutic Protein Design. In Advances in Protein Folding, Evolution and Design (APFED 2022) (pp. 67). [PubMan] : Maksymenko, K., Müller, P., Skokowa, J., Lupas, A., & ElGamacy, M. (2022). Protein design of growth factor inhibitors. In Advances in Protein Folding, Evolution and Design (APFED 2022) (pp. 29). [PubMan] : Maksymenko, K., Skokowa, J., Lupas, A., Müller, P., & ElGamacy, M. (2021). De novo Protein Design of Vascular Endothelial Growth Factor Inhibitors. Protein Science, 30(Supplement 1): 140, 61. [PubMan] : Maksymenko, K., Skokowa, J., Lupas, A., Müller, P., & ElGamacy, M. (2021). De novo Protein Design of Vascular Endothelial Growth Factor Inhibitors. Protein Science, 30(Supplement 1): 140, 61. [PubMan] : Čapek, D., Ünalan, M., & Müller, P. (2021). Wie Tiere sich selbst konstruieren. Biospektrum, 2021(05), 473-479. doi:10.1007/s12268-021-1622-4. [PubMan] : Balos, V., Müller, P., Jakob, G., Kläui, M., & Sajadi, M. (2021). Imprinting the complex dielectric permittivity of liquids into the spintronic terahertz emission. Applied Physics Letters, 119(9): 091104. doi:10.1063/5.0056909. [PubMan] : Soh, G., Kögler, A., & Müller, P. (2021). A Simple and Effective Transplantation Device for Zebrafish Embryos. Journal of Visualized Experiments, 2021: 174. doi:10.3791/62767. [PubMan]