Researcher Portfolio

Jug, Florian

Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher Profile

Position: Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher ID: https://pure.mpg.de/cone/persons/resource/persons219280

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Publications

(1 - 25 of 41)

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: Werner, M. E., Ray, D. D., Breen, C., Staddon, M. F., Jug, F., Banerjee, S., & Maddox, A. S. (2024). Mechanical and biochemical feedback combine to generate complex contractile oscillations in cytokinesis. Current biology: CB, 34(14), 3201-3214. doi:10.1016/j.cub.2024.06.037. [PubMan] : Martins, N. P., Kalaidzidis, Y., Zerial, M., & Jug, F. (2023). DeepContrast: Deep Tissue Contrast Enhancement using Synthetic Data Degradations and OOD Model Predictions. In 2023 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS, ICCVW (pp. 3830-3839). Piscataway, N.J.: IEEE. [PubMan] : Slabodnick, M. M., Tintori, S. C., Prakash, M., Zhang, P., Higgins, C. D., Chen, A. H., Cupp, T. D., Wong, T., Bowie, E., Jug, F., & Goldstein, B. (2023). Zyxin contributes to coupling between cell junctions and contractile actomyosin networks during apical constriction. PLoS genetics, 19(3): e1010319. doi:10.1371/journal.pgen.1010319. [PubMan] : Kuznetsova, K., Chabot, N. M., Ugolini, M., Wu, E., Lalit, M., Oda, H., Sato, Y., Kimura, H., Jug, F., & Vastenhouw, N. (2023). Nanog organizes transcription bodies. Current biology: CB, 33(1), 164-173. doi:10.1016/j.cub.2022.11.015. [PubMan] : Schmitt, L. T., Paszkowski-Rogacz, M., Jug, F., & Buchholz, F. (2022). Prediction of designer-recombinases for DNA editing with generative deep learning. Nature communications, 13(1): 7966. doi:10.1038/s41467-022-35614-6. [PubMan] : Nievergelt, A. P., Zykov, I., Diener, D. R., Chhatre, A., Buchholz, T.-O., Delling, M., Diez, S., Jug, F., Štěpánek, L., & Pigino, G. (2022). Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport. Current biology: CB, 32(18), 4071-4078. doi:10.1016/j.cub.2022.07.033. [PubMan] : Lalit, M., Tomancak, P., & Jug, F. (2022). EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data. Medical image analysis, 81: 102523. doi:10.1016/j.media.2022.102523. [PubMan] : Morena, J. J. d. l., Conesa, P., Fonseca, Y. C., Isidro-Gómez, F. P. d., Herreros, D., Fernández-Giménez, E., Strelak, D., Moebel, E., Buchholz, T.-O., Jug, F., Martinez-Sanchez, A., Harastani, M., Jonic, S., Conesa, J. J., Cuervo, A., Losana, P., Sánchez, I., Iceta, M., Cano, L. D., Gragera, M., Melero, R., Sharov, G., Castaño-Díez, D., Koster, A., Piccirillo, J. G., Vilas, J. L., Otón, J., Marabini, R., Sorzano, C. O. S., & Carazo, J. M. (2022). ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation. Journal of structural biology, 214(3): 107872. doi:10.1016/j.jsb.2022.107872. [PubMan] : Vignes, H., Vagena-Pantoula, C., Prakash, M., Fukui, H., Norden, C., Mochizuki, N., Jug, F., & Vermot, J. (2022). Extracellular mechanical forces drive endocardial cell volume decrease during zebrafish cardiac valve morphogenesis. Developmental cell, 57(5), 598-609. doi:10.1016/j.devcel.2022.02.011. [PubMan] : Arzt, M., Deschamps, J., Schmied, C., Pietzsch, T., Schmidt, D., Tomancak, P., Haase, R., & Jug, F. (2022). LABKIT: Labeling and Segmentation Toolkit for Big Image Data. Frontiers in computer science, 4: 777728. doi:10.3389/fcomp.2022.777728. [PubMan] : Cordero-Espinoza, L., Dowbaj, A., Kohler, T. N., Strauss, B., Sarlidou, O., Belenguer, G., Pacini, C., Martins, N. P., Dobie, R., Wilson-Kanamori, J. R., Butler, R., Prior, N., Serup, P., Jug, F., Henderson, N. C., Hollfelder, F., & Huch, M. (2021). Dynamic cell contacts between periportal mesenchyme and ductal epithelium act as a rheostat for liver cell proliferation. Cell stem cell, 28(11), 1907-1921. doi:10.1016/j.stem.2021.07.002. [PubMan] : Chamier, L. v., Laine, R. F., Jukkala, J., Spahn, C., Krentzel, D., Nehme, E., Lerche, M., Hernández-Pérez, S., Mattila, P. K., Karinou, E., Holden, S., Solak, A. C., Krull, A., Buchholz, T.-O., Jones, M. L., Royer, L., Leterrier, C., Shechtman, Y., Jug, F., Heilemann, M., Jacquemet, G., & Henriques, R. (2021). Democratising deep learning for microscopy with ZeroCostDL4Mic. Nature communications, 12(1), 2276-2276. doi:10.1038/s41467-021-22518-0. [PubMan] : Müller, A., Schmidt, D., Xu, C. S., Pang, S., D'Costa, J. V., Kretschmar, S., Münster, C., Kurth, T., Jug, F., Weigert, M., Hess, H., & Solimena, M. (2021). 3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse β cells. The Journal of cell biology, 220(2): e202010039. doi:10.1083/jcb.202010039. [PubMan] : Lalit, M., Tomancak, P., & Jug, F. (2021). Embedding-based Instance Segmentation in Microscopy. In Medical Imaging with deep learning (pp. 399-415). Palo Alto, California USA: AAAI Press. [PubMan] : Schroeder, A. B., Dobson, E. T. A., Rueden, C., Tomancak, P., Jug, F., & Eliceiri, K. W. (2020). The ImageJ ecosystem: Open-source software for image visualization, processing, and analysis. Protein science: a publication of the Protein Society, 30(1), 234-249. doi:10.1002/pro.3993. [PubMan] : Jain, A., Ulman, V., Mukherjee, A., Prakash, M., Cuenca, M. B., Pimpale, L. G., Münster, S., Haase, R., Panfilio, K. A., Jug, F., Grill, S. W., Tomancak, P., & Pavlopoulos, A. (2020). Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Nature communications, 11(1): 5604. doi:10.1038/s41467-020-19356-x. [PubMan] : Jain, A., Ulman, V., Mukherjee, A., Prakash, M., Cuenca, M. B., Pimpale, L. G., Muenster, S., Haase, R., Panfilio, K. A., Jug, F., Grill, S. W., Tomancak, P., & Pavlopoulos, A. (2020). Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Nature communications, 11(1): 5604. doi:10.1038/s41467-020-19356-x. [PubMan] : Goncharova, A., Honigmann, A., Jug, F., & Krull, A. (2020). Improving Blind Spot Denoising for Microscopy. In A. Bartoli (Ed.), Computer vision - ECCV 2020 workshops: Glasgow, UK, August 23-28, 2020: proceedings: Part 1 (pp. 380-393). Cham: Springer International Publishing. [PubMan] : Lalit, M., Handberg-Thorsager, M., Hsieh, Y.-W., Jug, F., & Tomancak, P. (2020). Registration of Multi-modal Volumetric Images by Establishing Cell Correspondence. In A. Bartoli (Ed.), Computer vision - ECCV 2020 workshops: Glasgow, UK, August 23-28, 2020: proceedings: Part 1 (pp. 458-473). Cham: Springer International Publishing. [PubMan] : Buchholz, T.-O., Prakash, M., Schmidt, D., Krull, A., & Jug, F. (2020). DenoiSeg: Joint Denoising and Segmentation. In A. Bartoli (Ed.), Computer vision - ECCV 2020 workshops: Glasgow, UK, August 23-28, 2020: proceedings: Part 1 (pp. 324-337). Cham: Springer International Publishing. [PubMan] : Prakash, M., Buchholz, T.-O., Lalit, M., Tomancak, P., Jug, F., & Krull, A. (2020). Leveraging Self-supervised Denoising for Image Segmentation. In IEEE ISBI 2020: International Conference on Biomedical Imaging: April 2-7, 2020, Iowa City, Iowa, USA: symposium proceeding (pp. 428-432). Piscataway, N.J.: IEEE. [PubMan] : Prakash, M., Lalit, M., Tomancak, P., Krull, A., & Jug, F. (2020). Fully Unsupervised Probabilistic Noise2Void. In IEEE ISBI 2020: International Conference on Biomedical Imaging: April 2-7, 2020, Iowa City, Iowa, USA: symposium proceeding (pp. 154-158). Piscataway, N.J.: IEEE. [PubMan] : Haase, R., Royer, L., Steinbach, P., Schmidt, D., Dibrov, A., Schmidt, U., Weigert, M., Maghelli, N., Tomancak, P., Jug, F., & Myers, E. W. (2020). CLIJ: GPU-accelerated image processing for everyone. Nature methods, 17(1), 5-6. doi:10.1038/s41592-019-0650-1. [PubMan] : Vicar, T., Balvan, J., Jaros, J., Jug, F., Kolar, R., Masarik, M., & Gumulec, J. (2019). Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison. BMC bioinformatics, 20(1): 360. doi:10.1186/s12859-019-2880-8. [PubMan] : Akbas, C. E., Ulman, V., Maska, M., Jug, F., & Kozubek, M. (2019). Automatic Fusion of Segmentation and Tracking Labels. In L. Leal-Taixé (Ed.), Computer Vision – ECCV 2018 Workshops: Munich, Germany, September 8-14, 2018, Proceedings, Part VI (pp. 446-454). Cham: Springer International Publishing. [PubMan]