Researcher Portfolio
Pietzsch, Tobias
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society
Researcher Profile
Position: Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons219536
Publications
: Selzer, G. J., Rueden, C., Hiner, M. C., Evans, E. L., Kolb, D., Wiedenmann, M., Birkhold, C., Buchholz, T.-O., Helfrich, S., Northan, B., Walter, A., Schindelin, J., Pietzsch, T., Saalfeld, S., Berthold, M. R., & Eliceiri, K. W. (2024). SciJava Ops: an improved algorithms framework for Fiji and beyond. Frontiers in bioinformatics, 4: 1435733. doi:10.3389/fbinf.2024.1435733. [PubMan] : Jain, A., Ulman, V., Krumnikl, M., Pietzsch, T., Preibisch, S., & Tomančák, P. (2024). Image Processing and Analysis of Light Sheet Microscopy Data. In E. G. Reynaud (Ed. ), Light Sheet Fluorescence Microscopy (pp. 203-229). Weinheim: Wiley-VCH. [PubMan] : Pietzsch, T., Duso, L., & Zechner, C. (2021). Compartor: A toolbox for the automatic generation of moment equations for dynamic compartment populations. Bioinformatics (Oxford, England), btab058, pp. 1-1. doi:10.1093/bioinformatics/btab058. [PubMan] : Viktorinová, I., Haase, R., Pietzsch, T., Henry, I., & Tomancak, P. (2019). Analysis of Actomyosin Dynamics at Local Cellular and Tissue Scales Using Time-lapse Movies of Cultured Drosophila Egg Chambers. Journal of visualized experiments: JoVE, 148: e58587. doi:10.3791/58587. [PubMan] : Günther, U., Pietzsch, T., Gupta, A., Harrington, K., Tomancak, P., Gumhold, S., & Sbalzarini, I. F. (2019). scenery: Flexible Virtual Reality Visualization on the Java VM. In 2019 IEEE Visualization Conference (VIS) (pp. 166-170). Piscataway, N.J.: IEEE. [PubMan] : Wolff, C., Tinevez, J.-Y., Pietzsch, T., Stamataki, E., Harich, B., Guignard, L., Preibisch, S., Shorte, S., Keller, P., Tomancak, P., & Pavlopoulos, A. (2018). Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb. eLife, 7: e34410. doi:10.7554/eLife.34410. [PubMan] : Sollich, H., Zadow, U. v., Pietzsch, T., Tomancak, P., & Dachselt, R. (2016). Exploring Time-dependent Scientific Data Using Spatially Aware Mobiles and Large Displays. In Proceedings of the 2016 ACM on Interactive Surfaces and Spaces (pp. 349-354). New York: ACM. [PubMan] : Schmied, C., Steinbach, P., Pietzsch, T., Preibisch, S., & Tomancak, P. (2016). An automated workflow for parallel processing of large multiview SPIM recordings. Bioinformatics (Oxford, England), 32(7), 1112-1114. [PubMan] : Jug, F., Pietzsch, T., Kainmueller, D., & Myers, G. (2015). Tracking by Assignment Facilitates Data Curation. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014 (pp. 1-12). Academic Press. [PubMan] : Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer: visualization and processing for large image data sets. Nature Methods, 12(6), 481-483. [PubMan] : Jug, F., Pietzsch, T., Preibisch, S., & Tomancak, P. (2014). Bioimage Informatics in the context of Drosophila research. Methods (San Diego, Calif.), 68(1), 60-73. [PubMan] : Jug, F., Pietzsch, T., Kainmueller, D., Funke, J., Kaiser, M., van Nimwegen, E., Rother, C., & Myers, G. (2014). Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine. In Bayesian and grAphical models for biomedical imaging first international workshop, BAMBI 2014, Cambridge, MA, USA, September 18, 2014; revised selected papers (pp. 25-36). [PubMan] : Pietzsch, T., Preibisch, S. W., Tomancak, P., & Saalfeld, S. (2012). ImgLib2 - Generic Image Processing in Java. Bioinformatics (Oxford, England), 28(22), 3009-3011. [PubMan] : Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S. W., Rueden, C., Saalfeld, S., Schmid, B., Tinevez, J.-Y., White, D., Hartenstein, V., Eliceiri, K. W., Tomancak, P., & Cardona, A. (2012). Fiji: an open-source platform for biological-image analysis. Nature Methods, 9(7), 676-682. [PubMan]