Researcher Portfolio
Hofmann, Martin
High Energy Astrophysics, MPI for Extraterrestrial Physics, Max Planck Society
Researcher Profile
Position: High Energy Astrophysics, MPI for Extraterrestrial Physics, Max Planck Society
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons23238
Publications
(1 - 25 of 304)
: Walshe, J. L., Ochmann, M., Neef, U., Dybkov, O., Dienemann, C., Oberthür, C., Zheenbekova, A., Urlaub, H., & Cramer, P. (2025). Molecular mechanism of co-transcriptional H3K36 methylation by SETD2. Nature Communications, 16: 9565. doi:10.1038/s41467-025-65439-y. [PubMan] : Welp, L. M., Wulf, A., Chernev, A., Horokhovskyi, Y., Moshkovskii, S., Dybkov, O., Neumann, P., Pašen, M., Siraj, A., Raabe, M., Göthert, H., Walshe, J., Infante, D. A., de A P Schwarzer, A., Dickmanns, A., Johannsson, S., Schmitzová, J., Wohlgemuth, I., Netz, E., He, Y., Fritzemeier, K., Delanghe, B., Viner, R., Vos, S., Oberbeckmann, E., Bohnsack, K., Bohnsack, M., Cramer, P., Ficner, R., Kohlbacher, O., Liepe, J., Sachsenberg, T., & Urlaub, H. (2025). Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. Nucleic Acids Research, 53(15): gkaf727. doi:10.1093/nar/gkaf727. [PubMan] : Zheenbekova, A., Walshe, J. L., Ochmann, M., Bäuerle, M., Neef, U., Maier, K. C., Rus, P., Yan, Y., Urlaub, H., Cramer, P., & Žumer, K. (2025). IWS1 positions downstream DNA to globally stimulate Pol II elongation. Nature Communications, 16: 7747. doi:10.1038/s41467-025-62913-5. [PubMan] : Zhang, L., Batters, C., Aibara, S., Gordiyenko, Y., Žumer, K., Schmitzová, J., Maier, K. C., Cramer, P., & Zhang, S. (2025). Structure of a transcribing Pol II-DSIF-SPT6-U1 snRNP complex. Nature Communications, 16: 5823. doi:10.1038/s41467-025-60979-9. [PubMan] : Lysakovskaia, K., Devadas, A., Schwalb, B., Lidschreiber, M., & Cramer, P. (2025). Promoter-proximal RNA polymerase II termination regulates transcription during human cell type transition. Nature Structural & Molecular Biology, 32, 995-1005. doi:10.1038/s41594-025-01486-9. [PubMan] : Kabinger, F., Doze, V., Schmitzová, J., Lidschreiber, M., Dienemann, C., & Cramer, P. (2025). Structural basis of SARS-CoV-2 polymerase inhibition by nonnucleoside inhibitor HeE1-2Tyr. Proceedings of the National Academy of Sciences of the United States of America, 122(10): e2419854122. doi:10.1073/pnas.2419854122. [PubMan] : Rengachari, S., Hainthaler, T., Oberthür, C., Lidschreiber, M., & Cramer, P. (2025). Mechanism of polyadenylation-independent RNA polymerase II termination. Nature Structural & Molecular Biology, 32, 339-345. doi:10.1038/s41594-024-01409-0. [PubMan] : van den Heuvel, D., Rodríguez-Martínez, M., van der Meer, P. J., Nieto Moreno, N., Park, J., Kim, H.-S., van Schie, J. J., Wondergem, A. P., D’Souza, A., Yakoub, G., Herlihy, A. E., Kashyap, K., Boissière, T., Walker, J., Mitter, R., Apelt, K., de Lint, K., Kirdök, I., Ljungman, M., Wolthuis, R. M., Cramer, P., Schärer, O. D., Kokic, G., Svejstrup, J. Q., & Luijsterburg, M. S. (2024). STK19 facilitates the clearance of lesion-stalled RNAPII during transcription-coupled DNA repair. Cell, 187(25), 7107-7125.e25. doi:10.1016/j.cell.2024.10.018. [PubMan] : Engeholm, M., Roske, J. J., Oberbeckmann, E., Dienemann, C., Lidschreiber, M., Cramer, P., & Farnung, L. (2024). Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT. Molecular Cell, 84(18), 3423-3437.e8. doi:10.1016/j.molcel.2024.08.022. [PubMan] : Welp, L. M., Sachsenberg, T., Wulf, A., Chernev, A., Horokhovskyi, Y., Neumann, P., Pašen, M., Siraj, A., Raabe, M., Johannsson, S., Schmitzova, J., Netz, E., Pfeuffer, J., He, Y., Fritzemeier, K., Delanghe, B., Viner, R., Vos, S. M., Cramer, P., Ficner, R., Liepe, J., Kohlbacher, O., & Urlaub, H. (2024). Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. bioRxiv. doi:10.1101/2024.08.29.610268. [PubMan] : Patil, S., Cremosnik, G., Dötsch, L., Flegel, J., Schulte, B., Maier, K. C., Žumer, K., Cramer, P., Janning, P., Sievers, S., Ziegler, S., & Waldmann, H. (2024). The Pseudo-Natural Product Tafbromin Selectively Targets the TAF1 Bromodomain 2. Angewandte Chemie International Edition, 63(32): e202404645. doi:10.1002/anie.202404645. [PubMan] : Velychko, T., Mohammad, E., Ferrer-Vicens, I., Parfentev, I., Werner, M., Studniarek, C., Schwalb, B., Urlaub, H., Murphy, S., Cramer, P., & Lidschreiber, M. (2024). CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release. Molecular Cell, 84(12), 2287-2303.e10. doi:10.1016/j.molcel.2024.05.007. [PubMan] : Žumer, K., Ochmann, M., Aljahani, A., Zheenbekova, A., Devadas, A., Maier, K. C., Rus, P., Neef, U., Oudelaar, A. M., & Cramer, P. (2024). FACT maintains chromatin architecture and thereby stimulates RNA polymerase II pausing during transcription in vivo. Molecular Cell, 84(11), 2053-2069.e9. doi:10.1016/j.molcel.2024.05.003. [PubMan] : Patil, S., Cremosnik, G. S., Dötsch, L., Flegel, J., Schulte, B., Maier, K. C., Zumer, K., Cramer, P., Janning, P., Sievers, S., & Waldmann, H. (2024). Tafbromin selectively targets the TAF1 bromodomain. Angewandte Chemie, International Edition in English. doi:10.1002/anie.202404645. [PubMan] : Zhan, Y., Grabbe, F., Oberbeckmann, E., Dienemann, C., & Cramer, P. (2024). Three-step mechanism of promoter escape by RNA polymerase II. Molecular Cell, 84(9), 1699-1710.e6. doi:10.1016/j.molcel.2024.03.016. [PubMan] : Fianu, I., Ochmann, M., Walshe, J. L., Dybkov, O., Cruz, J. N., Urlaub, H., & Cramer, P. (2024). Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 629, 219-227. doi:10.1038/s41586-024-07269-4. [PubMan] : Oberbeckmann, E., Quililan, K., Cramer, P., & Oudelaar, A. M. (2024). In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization. Nature Genetics, 56, 483-492. doi:10.1038/s41588-023-01649-8. [PubMan] : Kokic, G., Yakoub, G., van den Heuvel, D., Wondergem, A. P., van der Meer, P. J., van der Weegen, Y., Chernev, A., Fianu, I., Fokkens, T. J., Lorenz, S., Urlaub, H., Cramer, P., & Luijsterburg, M. S. (2024). Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nature Structural & Molecular Biology, 31, 536-547. doi:10.1038/s41594-023-01207-0. [PubMan] : Cramer, P. (2024). Good reasons for structural biology. Nature Structural & Molecular Biology, 31, 393-394. doi:10.1038/s41594-024-01232-7. [PubMan] : Chen, Y., & Cramer, P. (2024). RNA polymerase II elongation factors use conserved regulatory mechanisms. Current Opinion in Structural Biology, 84: 102766. doi:10.1016/j.sbi.2023.102766. [PubMan] : Sun, Y., Wiese, M., Hmadi, R., Karayol, R., Seyfferth, J., Martinez Greene, J., Erdogdu, N., Deboutte, W., Arrigoni, L., Holz, H., Renschler, G., Hirsch, N., Foertsch, A., Basilicata, M., Stehle, T., Shvedunova, M., Bella, C., Pessoa Rodrigues, C., Schwalb, B., Cramer, P., Manke, T., & Akhtar, A. (2023). MSL2 ensures biallelic gene expression in mammals. Nature, 624(7990), 173-181. doi:10.1038/s41586-023-06781-3. [PubMan] : Chen, Y., Kokic, G., Dienemann, C., Dybkov, O., Urlaub, H., & Cramer, P. (2023). Structure of the transcribing RNA polymerase II–Elongin complex. Nature Structural & Molecular Biology, 30, 1925-1935. doi:10.1038/s41594-023-01138-w. [PubMan] : Palau, A., Segerberg, F., Lidschreiber, M., Lidschreiber, K., Naughton, A., Needhamsen, M., Jung, L., Jagodic, M., Cramer, P., Lehmann, S., Carlsten, M., & Lennartsson, A. (2023). Perturbed epigenetic transcriptional regulation in AML with IDH mutations causes increased susceptibility to NK cells. Leukemia, 37, 1830-1841. doi:10.1038/s41375-023-01972-3. [PubMan] : Garg, G., Dienemann, C., Farnung, L., Schwarz, J., Linden, A., Urlaub, H., & Cramer, P. (2023). Structural insights into human co-transcriptional capping. Molecular Cell, 83(14), 2464-2477.e5. doi:10.1016/j.molcel.2023.06.002. [PubMan] : Rouvière, J. O., Salerno-Kochan, A., Lykke-Andersen, S., Garland, W., Dou, Y., Rathore, O., Molska, E. Š., Wu, G., Schmid, M., Bugai, A., Jakobsen, L., Zumer, K., Cramer, P., Andersen, J. S., Conti, E., & Jensen, T. H. (2023). ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts. Molecular Cell, 83(13), 2240-2257. doi:10.1016/j.molcel.2023.05.028. [PubMan]