Researcher Portfolio
Klocke, Daniel
Computational Infrastructure and Model Devlopment (CIMD), Scientific Computing Lab (ScLab), MPI for Meteorology, Max Planck Society, Emmy Noether Junior Research Group Cloud-Climate Feedbacks, The Atmosphere in the Earth System, MPI for Meteorology, Max Planck Society
Researcher Profile
Position: Computational Infrastructure and Model Devlopment (CIMD), Scientific Computing Lab (ScLab), MPI for Meteorology, Max Planck Society
Position: Emmy Noether Junior Research Group Cloud-Climate Feedbacks, The Atmosphere in the Earth System, MPI for Meteorology, Max Planck Society
Additional IDs: ORCID:
https://orcid.org/0000-0001-7405-013X
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons37206
Publications
(1 - 25 of 97)
: Strack, P., Brodie, E., Zhan, H., Schuenemann, V., Valente, L., Saiyed, T., Lowth, B., Angley, L., Perugini, M., Zeth, K., Truscott, K., & Dougan, D. (2020). Polymerase delta-interacting protein 38 (PDIP38) modulates the stability and activity of the mitochondrial AAA+ protease CLPXP. Communications Biology, 3(1): 646. doi:10.1038/s42003-020-01358-6. [PubMan] : Micevski, D., Zeth, K., Mulhern, T., Schuenemann, V., Zammit, J., Truscott, K., & Dougan, D. (2020). Insight into the RssB-Mediated Recognition and Delivery of σ s to the AAA+ Protease, ClpXP. Biomolecules, 10(4): 615. doi:10.3390/biom10040615. [PubMan] : Ferris, H., Zeth, K., Hulko, M., Dunin-Horkawicz, S., & Lupas, A. (2014). Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor. Journal of Structural Biology, 186(3), 349-356. doi:10.1016/j.jsb.2014.03.015. [PubMan] : Albrecht, R., Schütz, M., Oberhettinger, P., Faulstich, M., Bermejo, I., Rudel, T., Diederichs, K., & Zeth, K. (2014). Structure of BamA, an essential factor in outer membrane protein biogenesis. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen), 70(6), 1779-1789. doi:10.1107/S1399004714007482. [PubMan] : Zeth, K., Fokina, O., & Forchhammer, K. (2014). Structural basis and target-specific modulation of ADP sensing by the Synechococcus elongatus PII signaling protein. Integrative Biology, 289(13), 8960-8972. doi:10.1074/jbc.M113.536557. [PubMan] : Braun, V., Patzer, S., & Zeth, K. (2013). Crystal structure determination and biochemical studies reveal that pesticin, a protein toxin from Yersinia pestis, is derived from phage lysozymes. Poster presented at Jahrestagung der VAAM 2013 zusammen mit der KNVM: Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM) zusammen mit der Koninklijke Nederlandse Vereniging voor Microbiologie (KNVM), Bremen, Germany. [PubMan] : Song, C., Weichbrodt, C., Salnikov, E., Dynowski, M., Forsberg, B., Bechinger, B., Steinem, C., de Groot, B., Zachariae, U., & Zeth, K. (2013). Crystal structure and functional mechanism of a human antimicrobial membrane channel. Proceedings of the National Academy of Sciences of the United States of America, 110(12), 4586-4591. doi:10.1073/pnas.1214739110. [PubMan] : Zeth, K., Kozjak-Pavlov, V., Faulstich, M., Fraunholz, M., Hurwitz, R., Kepp, O., & Rudel, T. (2013). Structure and function of the PorB porin from disseminating Neisseria gonorrhoeae. Biochemical Journal, 449(3), 631-642. doi:10.1042/BJ20121025. [PubMan] : Forsberg, B., Song, C., Weichbrodt, C., Dynowski, M., Steinem, C., Zachariae, U., Zeth, K., & de Groot, B. (2013). Channel crystal structure and antimicrobial mechanism of Dermcidin from human skin. Biophysical Journal, 104(2 Supplement 1), 241A. [PubMan] : Tryggvesson, A., Ståhlberg, F., Mogk, A., Zeth, K., & Clarke, A. (2012). Interaction specificity between the chaperone and proteolytic components of the cyanobacterial Clp protease. Biochemical Journal, 446(2), 311-320. doi:10.1042/BJ20120649. [PubMan] : Zeth, K., Fokina, O., & Forchhammer, K. (2012). An engineered PII protein variant that senses a novel ligand: atomic resolution structure of the complex with citrate. Acta Crystallographica Section D: Biological Crystallography, 68(8), 901-908. doi:10.1107/S0907444912016447. [PubMan] : Patzer, S., Albrecht, R., Braun, V., & Zeth, K. (2012). Structural and mechanistic studies of pesticin, a bacterial homolog of phage lysozymes. The Journal of Biological Chemistry, 287(28), 23381-23396. doi:10.1074/jbc.M112.362913. [PubMan] : Usón, I., Patzer, S., Rodríguez, D., Braun, V., & Zeth, K. (2012). The crystal structure of the dimeric colicin M immunity protein displays a 3D domain swap. Journal of Structural Biology, 178(1), 45-53. doi:10.1016/j.jsb.2012.02.004. [PubMan] : Helbig, S., Patzer, S., Zeth, K., Schiene-Fischer, C., & Braun, V. (2012). Structural and functional dissection of the Invasin-Intimin family of bacterial adhesins. Poster presented at Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM 2012), Tübingen, Germany. [PubMan] : Song, C., Bordignon, E., Dynowski, M., Markov, G., de Groot, B., Zachariae, U., & Zeth, K. (2012). Structure and Dynamics of the Human Antimicrobial Peptide Dermcidin Oligomer: It is an Ion Channel. Biophysical Journal, 102(3 Supplement 1), 471A. [PubMan] : Ferris, H., Dunin-Horkawicz, S., Hornig, N., Hulko, M., Martin, J., Schultz, J., Zeth, K., Lupas, A., & Coles, M. (2012). Mechanism of regulation of receptor histidine kinases. Structure, 20(1), 56-66. doi:10.1016/j.str.2011.11.014. [PubMan] : Pesek, J., Büchler, R., Albrecht, R., Boland, W., & Zeth, K. (2011). Structure and mechanism of iron translocation by a DPS protein from Microbacterium arborescens. The Journal of Biological Chemistry, 286(40), 34872-34882. doi:10.1074/jbc.M111.246108. [PubMan] : Zeth, K., Pechlivanis, M., Samol, A., Pleiser, S., Vonrhein, C., & Kerkhoff, E. (2011). Molecular basis of actin nucleation factor cooperativity: crystal structure of the Spir-1 kinase non-catalytic C-lobe domain (KIND)•formin-2 formin SPIR interaction motif (FSI) complex. The Journal of Biological Chemistry, 286(35), 30732-30739. doi:10.1074/jbc.M111.257782. [PubMan] : Albrecht, R., & Zeth, K. (2011). Structural basis of outer membrane protein biogenesis in bacteria. The Journal of Biological Chemistry, 286(31), 27792-27803. doi:10.1074/jbc.M111.238931. [PubMan] : Mager, F., Gessmann, D., Nussberger, S., & Zeth, K. (2011). Functional refolding and characterization of two Tom40 isoforms from human mitochondria. Journal of Membrane Biology, 242(1), 11-21. doi:10.1007/s00232-011-9372-8. [PubMan] : Braun, V., Helbig, S., Patzer, S., Römer, C., & Zeth, K. (2011). Import and activation of the colicin M protein toxin requires the periplasmic FkpA prolyl cis-trans isomerase/chaperone in E. coli. Poster presented at Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM 2012), Karlsruhe, Germany. [PubMan] : Römer, C., Patzer, S., Albrecht, R., Zeth, K., & Braun, V. (2011). Expression, purification and crystallization of the Cmi immunity protein from Escherichia coli. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 67(4), 517-520. doi:10.1107/S1744309111006737. [PubMan] : Fokina, O., Chellamuthu, V.-R., Zeth, K., & Forchhammer, K. (2011). From 2-Oxoglutarate sensing to enzyme control by the Synechococcus elongatus PII signal transduction protein. Poster presented at Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM 2012), Karlsruhe, Germany. [PubMan] : Braun, V., Helbig, S., Patzer, S., Römer, C., & Zeth, K. (2011). Crystal structure of the colicin M immunity protein. Poster presented at Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM 2012), Karlsruhe, Germany. [PubMan] : Ferris, H., Dunin-Horkawicz, S., García Mondéjar, L., Hulko, M., Hantke, K., Martin, J., Schultz, J., Zeth, K., Lupas, A., & Coles, M. (2011). The mechanisms of HAMP-mediated signaling in transmembrane receptors. Structure, 19(3), 378-385. doi:10.1016/j.str.2011.01.006. [PubMan]