Researcher Portfolio

 
   

Dr. Sultan, Marc

Human Chromosome 21 (Marie-Laure Yaspo), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society  

 

Researcher Profile

 
Position: Human Chromosome 21 (Marie-Laure Yaspo), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons50584

External references

 
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Publications

 
  (1 - 25 of 26)
 : The 1000 Genome Project Consortium, Lehrach, H., Amstislavskiy, V., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M.-L., & Herwig, R. (2015). A global reference for human genetic variation. Nature, 526(7571), 68-74. doi:10.1038/nature15393. [PubMan] : Pandey, V., Sultan, M., Kashofer, K., Ralser, M., Amstislavskiy, V., Starmann, J., Osprian, I., Grimm, C., Hache, H., Yaspo, M. L., Sultmann, H., Trauner, M., Denk, H., Zatloukal, K., Lehrach, H., & Wierling, C. (2014). Comparative analysis and modeling of the severity of steatohepatitis in DDC-treated mouse strains. PLoS One, 9(10): e111006. doi:10.1371/journal.pone.0111006. [PubMan] : Sultan, M., Amstislavskiy, V., Risch, T., Schütte, M., Dökel, S., Ralser, M., Balzereit, D., Lehrach, H., & Yaspo, M. L. (2014). Influence of RNA extraction methods and library selection schemes on RNA-seq data. BMC Genomics, 15: 15:675. doi:10.1186/1471-2164-15-675. [PubMan] : Hovestadt, V., Jones, D. T., Picelli, S., Wang, W., Kool, M., Northcott, P. A., Sultan, M., Stachurski, K., Ryzhova, M., Warnatz, H.-J., Ralser, M., Brun, S., Bunt, J., Jager, N., Kleinheinz, K., Erkek, S., Weber, U. D., Bartholomae, C. C., von Kalle, C., Lawerenz, C., Eils, J., Koster, J., Versteeg, R., Milde, T., Witt, O., Schmidt, S., Wolf, S., Pietsch, T., Rutkowski, S., Scheurlen, W., Taylor, M. D., Brors, B., Felsberg, J., Reifenberger, G., Borkhardt, A., Lehrach, H., Wechsler-Reya, R. J., Eils, R., Yaspo, M. L., Landgraf, P., Korshunov, A., Zapatka, M., Radlwimmer, B., Pfister, S. M., & Lichter, P. (2014). Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. Nature, 510(7506), 537-541. doi:10.1038/nature13268. [PubMan] : Rashi-Elkeles, S., Warnatz, H. J., Elkon, R., Kupershtein, A., Chobod, Y., Paz, A., Amstislavskiy, V., Sultan, M., Safer, H., Nietfeld, W., Lehrach, H., Shamir, R., Yaspo, M. L., & Shiloh, Y. (2014). Parallel profiling of the transcriptome, cistrome, and epigenome in the cellular response to ionizing radiation. Science Signaling, 7(325): rs3. doi:10.1126/scisignal.2005032. [PubMan] : Jones, D. T. W., Hovestadt, V., Picelli, S., Wang, W., Northcott, P. A., Kool, M., Reifenberger, G., Pietsch, T., Sultan, M., Lehrach, H., Yaspo-Lehrach, M. L., Borkhardt, A., Landgraf, P., Eils, R., Korshunov, A., Zapatka, M., Radlwimmer, B., Pfister, S. M., & Lichter, P. (2013). The Medulloblastoma Methylome Reveals New Epigenetic Regulatory Mechanisms. In Neuro-Oncology (pp. 144-144). Retrieved from <Go to ISI>://WOS:000327456200577. [PubMan] : Khurana, E., Fu, Y., Colonna, V., Mu, X. J., Kang, H. M., Lappalainen, T., Sboner, A., Lochovsky, L., Chen, J., Harmanci, A., Das, J., Abyzov, A., Balasubramanian, S., Beal, K., Chakravarty, D., Challis, D., Chen, Y., Clarke, D., Clarke, L., Cunningham, F., Evani, U. S., Flicek, P., Fragoza, R., Garrison, E., Gibbs, R., Gumus, Z. H., Herrero, J., Kitabayashi, N., Kong, Y., Lage, K., Liluashvili, V., Lipkin, S. M., MacArthur, D. G., Marth, G., Muzny, D., Pers, T. H., Ritchie, G. R., Rosenfeld, J. A., Sisu, C., Wei, X., Wilson, M., Xue, Y., Yu, F., 1000 Genomes Project, C., Lehrach, H., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Dermitzakis, E. T., Yu, H., Rubin, M. A., Tyler-Smith, C., & Gerstein, M. (2013). Integrative annotation of variants from 1092 humans: application to cancer genomics. Science, 342(6154), 1235587-1235587. doi:10.1126/science.1235587. [PubMan] : Penkov, D., Mateos San Martin, D., Fernandez-Diaz, L. C., Rossello, C. A., Torroja, C., Sanchez-Cabo, F., Warnatz, H., Sultan, M., Yaspo Lehrach, M. L., Gabrieli, A., Tkachuk, V., Brendolan, A., Blasi, F., & Torres, M. (2013). Analysis of the DNA-binding profile and function of TALE homeoproteins reveals their specialization and specific interactions with Hox genes/proteins. Cell Reports, 3(4), 1321-33. doi:S2211-1247(13)00136-8 [pii]10.1016/j.celrep.2013.03.029. [PubMan] : Weischenfeldt, J., Simon, R., Feuerbach, L., Schlangen, K., Weichenhan, D., Minner, S., Wuttig, D., Warnatz, H. J., Stehr, H., Rausch, T., Jager, N., Gu, L., Bogatyrova, O., Stutz, A. M., Claus, R., Eils, J., Eils, R., Gerhauser, C., Huang, P. H., Hutter, B., Kabbe, R., Lawerenz, C., Radomski, S., Bartholomae, C. C., Falth, M., Gade, S., Schmidt, M., Amschler, N., Hass, T., Galal, R., Gjoni, J., Kuner, R., Baer, C., Masser, S., von Kalle, C., Zichner, T., Benes, V., Raeder, B., Mader, M., Amstislavskiy, V., Avci, M., Lehrach, H., Parkhomchuk, D., Sultan, M., Burkhardt, L., Graefen, M., Huland, H., Kluth, M., Krohn, A., Sirma, H., Stumm, L., Steurer, S., Grupp, K., Sultmann, H., Sauter, G., Plass, C., Brors, B., Yaspo Lehrach, M. L., Korbel, J. O., & Schlomm, T. (2013). Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer. Cancer Cell, 23(2), 159-70. doi:S1535-6108(13)00004-4 [pii]10.1016/j.ccr.2013.01.002. [PubMan] : Lappalainen, T., Sammeth, M., Friedlander, M. R., 't Hoen, P. A. C., Monlong, J., Rivas, M. A., Gonzalez-Porta, M., Kurbatova, N., Griebel, T., Ferreira, P. G., Barann, M., Wieland, T., Greger, L., van Iterson, M., Almlof, J., Ribeca, P., Pulyakhina, I., Esser, D., Giger, T., Tikhonov, A., Sultan, M., Bertier, G., MacArthur, D. G., Lek, M., Lizano, E., Buermans, H. P. J., Padioleau, I., Schwarzmayr, T., Karlberg, O., Ongen, H., Kilpinen, H., Beltran, S., Gut, M., Kahlem, K., Amstislavskiy, V., Stegle, O., Pirinen, M., Montgomery, S. B., Donnelly, P., McCarthy, M. I., Flicek, P., Strom, T. M., Lehrach, H., Schreiber, S., Sudbrak, R., Carracedo, A., Antonarakis, S. E., Haesler, R., Syvaenen, A. C., Van Ommen, G. J., Brazma, A., Meitinger, T., Rosenstiel, P., Guigo, R., Gut, I. G., Estivill, X., Dermitzakis, E. T., & Consortium, G. (2013). Transcriptome and genome sequencing uncovers functional variation in humans. Nature, 501(7468), 506-511. doi:Doi 10.1038/Nature12531. [PubMan] : Jager, N., Schlesner, M., Jones, D. T., Raffel, S., Mallm, J. P., Junge, K. M., Weichenhan, D., Bauer, T., Ishaque, N., Kool, M., Northcott, P. A., Korshunov, A., Drews, R. M., Koster, J., Versteeg, R., Richter, J., Hummel, M., Mack, S. C., Taylor, M. D., Witt, H., Swartman, B., Schulte-Bockholt, D., Sultan, M., Yaspo, M. L., Lehrach, H., Hutter, B., Brors, B., Wolf, S., Plass, C., Siebert, R., Trumpp, A., Rippe, K., Lehmann, I., Lichter, P., Pfister, S. M., & Eils, R. (2013). Hypermutation of the inactive X chromosome is a frequent event in cancer. Cell, 155(3), 567-81. doi:S0092-8674(13)01216-6 [pii]10.1016/j.cell.2013.09.042. [PubMan] : Jones, D. T., Hutter, B., Jager, N., Korshunov, A., Kool, M., Warnatz, H. J., Zichner, T., Lambert, S. R., Ryzhova, M., Quang, D. A., Fontebasso, A. M., Stutz, A. M., Hutter, S., Zuckermann, M., Sturm, D., Gronych, J., Lasitschka, B., Schmidt, S., Seker-Cin, H., Witt, H., Sultan, M., Ralser, M., Northcott, P. A., Hovestadt, V., Bender, S., Pfaff, E., Stark, S., Faury, D., Schwartzentruber, J., Majewski, J., Weber, U. D., Zapatka, M., Raeder, B., Schlesner, M., Worth, C. L., Bartholomae, C. C., von Kalle, C., Imbusch, C. D., Radomski, S., Lawerenz, C., van Sluis, P., Koster, J., Volckmann, R., Versteeg, R., Lehrach, H., Monoranu, C., Winkler, B., Unterberg, A., Herold-Mende, C., Milde, T., Kulozik, A. E., Ebinger, M., Schuhmann, M. U., Cho, Y. J., Pomeroy, S. L., von Deimling, A., Witt, O., Taylor, M. D., Wolf, S., Karajannis, M. A., Eberhart, C. G., Scheurlen, W., Hasselblatt, M., Ligon, K. L., Kieran, M. W., Korbel, J. O., Yaspo, M. L., Brors, B., Felsberg, J., Reifenberger, G., Collins, V. P., Jabado, N., Eils, R., Lichter, P., & Pfister, S. M. (2013). Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma. Nature Genetics, 45(8), 927-32. doi:ng.2682 [pii]10.1038/ng.2682. [PubMan] : Abecasis, G. R., Auton, A., Brooks, L. D., DePristo, M. A., Durbin, R. M., Handsaker, R. E., Kang, H. M., Marth, G. T., McVean, G. A., The 1000 Genomes Project Consortium, Sudbrak, R., Albrecht, M., Amstislavskiy, V., Borodina, T. A., Davydov, A., Herwig, R., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., & Lehrach, H. (2012). An integrated map of genetic variation from 1,092 human genomes. Nature, 491(7422), 56-65. doi:10.1038/nature11632. [PubMan] : Sultan, M., Dokel, S., Amstislavskiy, V., Wuttig, D., Sultmann, H., Lehrach, H., & Yaspo, M. L. (2012). A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods. Biochemical and Biophysical Research Communications, 422(4), 643-646. doi:10.1016/j.bbrc.2012.05.043. [PubMan] : Jones, D. T., Kool, M., Jäger, N., Zichner, T., Hutter, B., Sultan, M., Cho, Y. J., Pugh, T. J., Hovestadt, V., Stütz, A. M., Rausch, T., Warnatz, H. J., Ryzhova, M., Bender, S., Sturm, D., Pleier, S., Cin, H., Pfaff, E., Sieber, L., Wittmann, A., Remke, M., Witt, H., Hutter, S., Tzaridis, T., Weischenfeldt, J., Raeder, B., Avci, M., Amstislavskiy, V., Zapatka, M., Weber, U. D., Wang, Q., Lasitschka, B., Bartholomae, C. C., Schmidt, M., von Kalle, C., Ast, V., Lawerenz, C., Eils, J., Kabbe, R., Benes, V., van Sluis, P., Koster, J., Volckmann, R., Shih, D., Betts, M. J., Russell, R. B., Coco, S., Tonini, G. P., Schuller, U., Hans, V., Graf, N., Kim, Y. J., Monoranu, C., Roggendorf, W., Unterberg, A., Herold-Mende, C., Milde, T., Kulozik, A. E., von Deimling, A., Witt, O., Maass, E., Rossler, J., Ebinger, M., Schuhmann, M. U., Fruhwald, M. C., Hasselblatt, M., Jabado, N., Rutkowski, S., von Bueren, Williamson, D., Clifford, S. C., McCabe, M. G., Collins, V. P., Wolf, S., Wiemann, S., Lehrach, H., Brors, B., Scheurlen, W., Felsberg, J., Reifenberger, G., Northcott, P. A., Taylor, M. D., Meyerson, M., Pomeroy, S. L., Yaspo, M. L., Korbel, J. O., Korshunov, A., Eils, R., Pfister, S. M., & Lichter, P. (2012). Dissecting the genomic complexity underlying medulloblastoma. Nature, 488(7409), 100-105. doi:10.1038/nature11284. [PubMan] : Diez-Roux, G., Banfi, S., Sultan, M., Geffers, L., Anand, S., Rozado, D., Magen, A., Canidio, E., Pagani, M., Peluso, I., Lin-Marq, N., Koch, M., Bilio, M., Cantiello, I., Verde, R., De Masi, C., Bianchi, S. A., Cicchini, J., Perroud, E., Mehmeti, S., Dagand, E., Schrinner, S., Nurnberger, A., Schmidt, K., Metz, K., Zwingmann, C., Brieske, N., Springer, C., Hernandez, A. M., Herzog, S., Grabbe, F., Sieverding, C., Fischer, B., Schrader, K., Brockmeyer, M., Dettmer, S., Helbig, C., Alunni, V., Battaini, M. A., Mura, C., Henrichsen, C. N., Garcia-Lopez, R., Echevarria, D., Puelles, E., Garcia-Calero, E., Kruse, S., Uhr, M., Kauck, C., Feng, G., Milyaev, N., Ong, C. K., Kumar, L., Lam, M., Semple, C. A., Gyenesei, A., Mundlos, S., Radelof, U., Lehrach, H., Sarmientos, P., Reymond, A., Davidson, D. R., Dolle, P., Antonarakis, S. E., Yaspo, M. L., Martinez, S., Baldock, R. A., Eichele, G., & Ballabio, A. (2011). A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biology, 9(1), e1000582. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/21267068 http://www.plosbiology.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pbio.1000582&representation=PDF. [PubMan] : Borodina, T., Adjaye, J., & Sultan, M. (2011). A strand-specific library preparation protocol for RNA sequencing. Methods in Enzymology, 500, 79-98. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/21943893. [PubMan] : Warnatz, H. J., Schmidt, D., Manke, T., Piccini, I., Sultan, M., Borodina, T., Balzereit, D., Wruck, W., Soldatov, A., Vingron, M., Lehrach, H., & Yaspo, M. L. (2011). The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. The Journal of Biological Chemistry, 286(26), 23521-32. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/21555518 http://www.jbc.org/content/286/26/23521.full.pdf. [PubMan] : Diez-Roux, G., Banfi, S., Sultan, M., Geffers, L., Anand, S., Rozado, D., Magen, A., Canidio, E., Pagani, M., Peluso, I., Lin-Marq, N., Koch, M., Bilio, M., Cantiello, I., Verde, R., De Masi, C., Bianchi, S. A., Cicchini, J., Perroud, E., Mehmeti, S., Dagand, E., Schrinner, S., Nurnberger, A., Schmidt, K., Metz, K., Zwingmann, C., Brieske, N., Springer, C., Hernandez, A. M., Herzog, S., Grabbe, F., Sieverding, C., Fischer, B., Schrader, K., Brockmeyer, M., Dettmer, S., Helbig, C., Alunni, V., Battaini, M. A., Mura, C., Henrichsen, C. N., Garcia-Lopez, R., Echevarria, D., Puelles, E., Garcia-Calero, E., Kruse, S., Uhr, M., Kauck, C., Feng, G., Milyaev, N., Ong, C. K., Kumar, L., Lam, M., Semple, C. A., Gyenesei, A., Mundlos, S., Radelof, U., Lehrach, H., Sarmientos, P., Reymond, A., Davidson, D. R., Dolle, P., Antonarakis, S. E., Yaspo, M. L., Martinez, S., Baldock, R. A., Eichele, G., & Ballabio, A. (2011). A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol, 9(1), e1000582. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/21267068 http://www.plosbiology.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pbio.1000582&representation=PDF. [PubMan] : Richard, H., Schulz, M. H., Sultan, M., Nurnberger, A., Schrinner, S., Balzereit, D., Dagand, E., Rasche, A., Lehrach, H., Vingron, M., Haas, S. A., & Yaspo, M. L. (2010). Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Research, 38(10), e112-e112. doi:10.1093/nar/gkq041. [PubMan] : Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Kunstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A., Ferris, M., Balakrishnan, C. N., Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backstrom, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Volker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R., & Wilson, R. K. (2010). The genome of a songbird. Nature, 464(7289), 757-762. doi:10.1038/nature08819. [PubMan] : Sultan, M., Schulz, M. H., Hugues, R., Magen, A., Klingenhoff, A., Scherf, M., Seifert, M., Borodina, T., Soldatov, A., i Parkhomchuk, D., Schmidt, D., O'Keeffe, S., Haas, S., Vingron, M., Lehrach, H., & Yaspo, M.-L. (2008). A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science, 321(5891), 956-960. doi:10.1126/science.1160342. [PubMan] : Dahl, A., Sultan, M., Jung, A., Schwartz, R., Lange, M., Steinwand, M., Livak, K. J., Lehrach, H., & Nyarsik, L. (2007). Quantitative PCR based expression analysis on a nanoliter scale using polymer nano-well chips. Biomedical Microdevices, 9(3), 307-314. doi:10.1007/s10544-006-9034-2. [PubMan] : Sultan, M., Piccini, I., Balzereit, D., Herwig, R., Saran, N. G., Lehrach, H., Reeves, R. H., & Yaspo, M.-L. (2007). Gene expression variation in Down's syndrome mice allows prioritization of candidate genes. Genome Biology, 8(5), R91-R91. doi:10.1186/gb-2007-8-5-r91. [PubMan] : Sultan, M. (2007). Taking a functional genomic approach to the study of down syndrome pathogenesos. PhD Thesis, Freie Universität, Berlin. [PubMan]