Researcher Portfolio
Koch, Frederic
Herrmann Lab/Emeritus Group Developmental Genetics, Max Planck Institute for Molecular Genetics, Max Planck Society
Researcher Profile
Position: Herrmann Lab/Emeritus Group Developmental Genetics, Max Planck Institute for Molecular Genetics, Max Planck Society
Additional IDs: ORCID:
https://orcid.org/0000-0002-0142-2411
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons73879
Publications
: Tsaytler, P., Blaess, G., Scholze-Wittler, M., Meierhofer, D., Wittler, L., Koch, F., & Herrmann, B. G. (2024). SRF promotes long-range chromatin loop formation and stem cell pluripotency. Cell Reports, 43(10): 114846. doi:10.1016/j.celrep.2024.114846. [PubMan] : Tsaytler, P., Blaess, G., Scholze-Wittler, M., Koch, F., & Herrmann, B. G. (2024). Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers. Stem Cell Reports, 19(5), 618-628. doi:10.1016/j.stemcr.2024.03.003. [PubMan] : Schifferl, D., Scholze-Wittler, M., Villaronga Luque, A., Pustet, M., Wittler, L., Veenvliet, J. V., Koch, F., & Herrmann, B. G. (2023). Genome-wide identification of notochord enhancers comprising the regulatory landscape of the Brachyury (T) locus in mouse. Development, 150(22): dev202111. doi:10.1242/dev.202111. [PubMan] : Tsaytler, P., Liu, J., Blaess, G., Schifferl, D., Veenvliet, J. V., Wittler, L., Timmermann, B., Herrmann, B. G., & Koch, F. (2023). BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage. Development, dev.201450. doi:10.1242/dev.201450. [PubMan] : Schifferl, D., Scholze-Wittler, M., Wittler, L., Veenvliet, J. V., Koch, F., & Herrmann, B. G. (2021). A 37 kb region upstream of brachyury comprising a notochord enhancer is essential for notochord and tail development. Development, 148(23): dev200059. doi:10.1242/dev.200059. [PubMan] : Veenvliet, J. V., Bolondi, A., Kretzmer, H., Haut, L., Scholze-Wittler, M., Schifferl, D., Koch, F., Guignard, L., Sampath Kumar, A., Pustet, M., Heimann, S., Buschow, R., Wittler, L., Timmermann, B., Meissner, A., & Herrmann, B. G. (2020). Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. Science, 370(6522): eaba4937. doi:10.1126/science.aba4937. [PubMan] : Koch, F., Scholze, M., Wittler, L., Schifferl, D., Sudheer, S., Grote, P., Timmermann, B., Macura, K., & Herrmann, B. G. (2017). Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors. Developmental Cell, 42, 514-526. doi:10.1016/j.devcel.2017.07.021. [PubMan] : Cauchy, P., Koch, F., & Andrau, J.-C. (2017). Two possible modes of pioneering associated with combinations of H2A.Z and p300/CBP at nucleosome-occupied enhancers. Transcription, 8(3), 179-184. doi:10.1080/21541264.2017.1291395. [PubMan] : Fenouil, R., Descostes, N., Spinelli, L., Koch, F., Maqbool, M. A., Benoukraf, T., Cauchy, P., Innocenti, C., Ferrier, P., & Andrau, J.-C. (2016). Pasha: a versatile R package for piling chromatin HTS data. Bioinformatics, 32(16), 2528-2530. doi:10.1093/bioinformatics/btw206. [PubMan] : Descostes, N., Heidemann, M., Spinelli, L., Schüller, R., Maqbool, M. A., Fenouil, R., Koch, F., Innocenti, C., Gut, M., Gut, I., Eick, D., & Andrau, J.-C. (2014). Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells. eLife, 3: e02105. doi:10.7554/eLife.02105. [PubMan]