Researcher Portfolio
Lupas, Andrei N
Baumeister, Wolfgang / Molecular Structural Biology, Max Planck Institute of Biochemistry, Max Planck Society, Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, Department Protein Evolution, Max Planck Institute for Developmental Biology, Max Planck Society, Max Planck Institute for Biology Tübingen, Max Planck Society, Max Planck Institute for Developmental Biology, Max Planck Society
Researcher Profile
Position: Max Planck Institute for Biology Tübingen, Max Planck Society
Position: Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society
Position: Department Protein Evolution, Max Planck Institute for Developmental Biology, Max Planck Society
Position: Max Planck Institute for Developmental Biology, Max Planck Society
Position: Baumeister, Wolfgang / Molecular Structural Biology, Max Planck Institute of Biochemistry, Max Planck Society
Additional IDs: MPIB: andrei
ORCID: https://orcid.org/0000-0002-1959-4836
ORCID: https://orcid.org/0000-0002-1959-4836
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons78342
Publications
(1 - 25 of 281)
: Murray, D., Jahnel, M., Lauer, J., Avellaneda, M., Brouilly, N., Cezanne, A., Morales-Navarrete, H., Perini, E., Ferguson, C., Lupas, A., Kalaidzidis, Y., Parton, R., Grill, S., & Zerial, M. (2025). Author Correction: An endosomal tether undergoes an entropic collapse to bring vesicles together. Nature, 637(8048), E29. doi:10.1038/s41586-024-08567-7. [PubMan] : Ullrich, T., Hernandez-Alvarez, B., Pollmann, C., Ritter, M., Haaf, J., Aghaallaei, N., Piehler, J., Tesakov, I., El-Riz, M., Maksymenko, K., Hatskovska, V., Kandabarua, S., Klimiankou, M., Lengerke, C., Welte, K., Lupas, A., Skokowa, J., & ElGamacy, M. (2024). Modulating G-CSFR Signaling Using De Novo Designed Cytokines. Poster presented at 66th ASH Annual Meeting, San Diego, CA, USA. [PubMan] : Fruet, C., Martinez-Goikoetxea, M., Merino, F., & Lupas, A. (2024). A computational model for lipid-anchored polysaccharide export by the outer-membrane protein GfcD. Biophysical Journal, 123(20), 3491-3499. doi:10.1016/j.bpj.2024.08.012. [PubMan] : Milijaš Jotić, M., Lupas, A., Skokowa, J., & ElGamacy, M. (2024). Computational Design of Bivalent Protein Inhibitors: Targeting AML with Dual Precision. Poster presented at 23rd European Conference on Computational Biology (ECCB 2024), Turku, Finland. [PubMan] : Lupas, A. (2024). Transmembrane signal transduction along a coiled-coil backbone. In 77th Annual Meeting of the Society of General Physiologists. [PubMan] : Hatskovska, V., Skokowa, J., Hernandez-Alvarez, B., Piehler, J., Lupas, A., & ElGamacy, M. (2024). De novo Design and Characterization of Bispecific Cytokines with Novel Function. Poster presented at 23rd European Conference on Computational Biology (ECCB 2024), Turku, Finland. [PubMan] : Hu, Y., Schwab, S., Deiss, S., Escudeiro, P., van Heesch, T., Joiner, J., Vreede, J., Hartmann, M., Lupas, A., Hernandez Alvarez, B., Alva, V., & Dame, R. (2024). Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research, 52(14): gkae485, pp. 8193-8204. doi:10.1093/nar/gkae485. [PubMan] : Hu, Y., Schwab, S., Escudeiro, P., van Heesch, T., Vreede, J., Hartmann, M., Lupas, A., Dame, R., Alva, V., & Hernandez Alvarez, B. (2024). Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. In Molecular Origins of LIFE (pp. 59). [PubMan] : Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallae, N., Tesakov, I., El-Riz, M., Maksymenko, K., Hatskovska, V., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (submitted). Tuning of granulopoietic signaling by de novo designed agonists. [PubMan] : Qiu, K., Dunin-Horkawicz, S., & Lupas, A. (submitted). Exploiting protein language model sequence representations for repeat detection. [PubMan] : Ullrich, T., Pollmann, C., Ritter, M., Haaf, J., Aghaallae, N., Tesakov, I., El-Riz, M., Maksymenko, K., Hatskovska, V., Kandabarau, S., Klimiankou, M., Lengerke, C., Welte, K., Hernandez-Alvarez, B., Müller, P., Lupas, A., Piehler, J., Skokowa, J., & ElGamacy, M. (submitted). Tuning of granulopoietic signaling by de novo designed agonists. [PubMan] : Lupas, A. (2024). The virtual proteome of life: What is it and why should we care?. Talk presented at 2nd Meeting on Machine Learning and Non-Globular Proteins (ML4NGP). Thessaloniki, Greece. 2024-05-14 - 2024-05-17. [PubMan] : Yoshimoto, S., Suzuki, A., Kanie, J., Koiwai, J., Lupas, A., & Hori, K. (submitted). Insights into the complex formation of a trimeric autotransporter adhesin with a peptidoglycan-binding periplasmic protein. [PubMan] : Martinez Goikoetxea, M., Madaj, R., Ludwiczak, J., Lupas, A., & Dunin-Horkawicz, S. (2023). Old folds can learn new tricks: Alphafold-driven insights on coiled-coil structure. Poster presented at 3D-BioInfo ICSB 3D-SIG ELIXIR Czech Republic Community Meeting in Structural Bioinformatics, Praha, Czech Republic. [PubMan] : Martinez-Goikoetxea, M., & Lupas, A. (2023). New protein families with hendecad coiled coils in the proteome of life. Journal of Structural Biology, 215(3): 108007. doi:10.1016/j.jsb.2023.108007. [PubMan] : Maksymenko, K., Maurer, A., Aghaallaei, N., Barry, C., Borbarán-Bravo, N., Ullrich, T., Dijkstra, T., Hernandez-Alvarez, B., Müller, P., Lupas, A., Skokowa, J., & ElGamacy, M. (2023). The design of functional proteins using tensorized energy calculations. Cell Reports Methods, 3(8): 100560. doi:10.1016/j.crmeth.2023.100560. [PubMan] : Maksymenko, K., Maurer, A., Aghaallaei, N., Barry, C., Borbarán-Bravo, N., Ullrich, T., Dijkstra, T., Hernandez-Alvarez, B., Müller, P., Lupas, A., Skokowa, J., & ElGamacy, M. (2023). The design of functional proteins using tensorized energy calculations. Cell Reports Methods, 3(8): 100560. doi:10.1016/j.crmeth.2023.100560. [PubMan] : Hu, Y., Deiss, S., Joiner, J., Hartmann, M., Lupas, A., Hernandez Alvarez, B., & Alva, V. (submitted). Atomic resolution structure of a DNA-binding histone protein from the bacterium Bdellovibrio bacteriovorus. [PubMan] : Martinez-Goikoetxea, M., & Lupas, A. (2023). A conserved motif suggests a common origin for a group of proteins involved in the cell division of Gram-positive bacteria. PLoS One, 18(1): e0273136. doi:10.1371/journal.pone.0273136. [PubMan] : Yoshimoto, S., Aoki, S., Ohara, Y., Ishikawa, M., Suzuki, A., Linke, D., Lupas, A., & Hori, K. (2023). Identification of the adhesive domain of AtaA from Acinetobacter sp. Tol 5 and its application in immobilizing Escherichia coli. Frontiers in Bioengineering and Biotechnology, 10: e1095057. doi:10.3389/fbioe.2022.1095057. [PubMan] : Dobbelstein, A., Lupas, A., & Alva, V. (2022). Variety of domains in trimeric autotransporter adhesins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins (pp. 17). [PubMan] : Schramm, A., Springer, F., Oberist, C., Wilhelm, J., Martin, J., Hartmann, M., & Lupas, A. (2022). Cryptic coiled-coil forming potential of ribosomal protein fragments. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins (pp. 57). [PubMan] : Ptacek, J., Albrecht, R., Dunin-Horkawicz, S., Schultz, J., Coles, M., Hartmann, M., & Lupas, A. (2022). Archaeal receptor Af1503: an ideal model for structural and functional studies of transmembrane signaling. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins (pp. 54). [PubMan] : Maksymenko, K., Skokowa, J., Müller, P., Lupas, A., & ElGamacy, M. (2022). Protein design of growth factor inhibitors. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins (pp. 41). [PubMan] : Ullrich, T., Skokowa, J., Lupas, A., & ElGamacy, M. (2022). Computational design of granulopoietic proteins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins (pp. 62). [PubMan]