Researcher Portfolio
Hofmann, Daniel
Dept. Landfester: Physical Chemistry of Polymers, MPI for Polymer Research, Max Planck Society, MPI for Polymer Research, Max Planck Society
Researcher Profile
Position: Dept. Landfester: Physical Chemistry of Polymers, MPI for Polymer Research, Max Planck Society
Position: MPI for Polymer Research, Max Planck Society
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons85352
Publications
(1 - 25 of 81)
: Awad, S., Valleriani, A., & Chiarugi, D. (2024). A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. NAR: genomics and bioinformatics, 6(2): lqae036. doi:10.1093/nargab/lqae036. [PubMan] : Heller, A.-D., Valleriani, A., & Cipitria, A. (2024). Phase diagrams of bone remodeling using a 3D stochastic cellular automaton. PLOS ONE, 19(6): e0304694. doi:10.1371/journal.pone.0304694. [PubMan] : Tsirigoni, A.-M., Göktas, M., Atris, Z., Valleriani, A., Vila Verde, A., & Blank, K. G. (2023). Chain sliding versus β-sheet formation upon shearing single α-helical coiled coils. Macromolecular Bioscience, 23(5): 202200563. doi:10.1002/mabi.202200563. [PubMan] : Giacomini, G., Graziani, C., Lachi, V., Bongini, P., Pancino, N., Bianchini, M., Chiarugi, D., Valleriani, A., & Andreini, P. (2022). A neural networks approach for the analysis of reproducible ribo–seq profiles. Algorithms, 15(8): 274. doi:10.3390/a15080274. [PubMan] : Mohr, E., Hinnenthal, T., Gryzik, S., Hoang, Y., Lischke, T., Retzlaff, J., Mekonnen, A., Paul, F., Valleriani, A., Radbruch, A., Vera, J., & Baumgrass, R. (2022). Bin-based visualization of cytokine-co-expression patterns of IL-10-producing CD4 T cell subsets. European Journal of Immunology, 52(10), 1684-1687. doi:10.1002/eji.202249829. [PubMan] : Thai, E., Costa, G., Weyrich, A., Murugan, R., Oyen, D., Flores-Garcia, Y., Prieto, K., Bosch, A., Valleriani, A., Wu, N. C., Pholcharee, T., Scally, S. W., Wilson, I. A., Wardemann, H., Julien, J.-P., & Levashina, E. A. (2020). A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. Journal of Experimental Medicine, 217(11): 20200061. doi:10.1084/jem.20200061. [PubMan] : Siciliano, G., Costa, G., Suárez-Cortés, P., Valleriani, A., Alano, P., & Levashina, E. A. (2020). Critical steps of Plasmodium falciparum ookinete maturation. Frontiers in Microbiology, 11: 269. doi:10.3389/fmicb.2020.00269. [PubMan] : Valleriani, A., & Chiarugi, D. (2020). A workbench for the translational control of gene expression. bioRxiv. doi:10.1101/2020.01.28.923219. [PubMan] : Thai, E., Costa, G., Weyrich, A., Murugan, R., Oyen, D., Prieto, K., Bosch, A., Valleriani, A., Wu, N. C., Pholcharee, T., Scally, S. W., Wilson, I. A., Wardemann, H., Julien, J.-P., & Levashina, E. A. (2020). A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. Journal of Experimental Medicine, 217(11): e20200061. doi:10.1084/jem.20200061. [PubMan] : Broeker, N. K., Roske, Y., Valleriani, A., Stephan, M. S., Andres, D., Koetz, J., Heinemann, U., & Barbirz, S. (2019). Time-resolved DNA release from an O-antigen–specific Salmonella bacteriophage with a contractile tail. Journal of Biological Chemistry, 294(31), 11751-11761. doi:10.1074/jbc.RA119.008133. [PubMan] : Bergues Pupo, A. E., Göktas, M., Tunn, I., López García, P., Vila Verde, A., Blank, K., & Valleriani, A. (2018). Goodness of fit testing in dynamic single-molecule force spectroscopy. The Journal of Chemical Physics, 149: 244120. doi:10.1063/1.5055071. [PubMan] : Valleriani, A. (2017). Stochastic modeling of complex macromolecular decay. In Lectures in Pure and Applied Mathematics (pp. 1-28). Potsdam: Potsdam University Press. [PubMan] : Wiechecki, K., Manohar, S., Silva, G., Tchourine, K., Jacob, S., Valleriani, A., & Vogel, C. (2017). Integrative meta-analysis reveals that most yeast proteins are very stable. bioRxiv. doi:10.1101/165290. [PubMan] : Stange, M., Hintsche, M., Sachse, K., Gerhardt, M., Valleriani, A., & Beta, C. (2017). Analyzing the spatial positioning of nuclei in polynuclear giant cells. Journal of Physics D: Applied Physics, 50(46): 464001. doi:10.1088/1361-6463/aa8da0. [PubMan] : Bühning, M., Valleriani, A., & Leimkühler, S. (2017). The role of SufS is restricted to Fe−S cluster biosynthesis in Escherichia coli. Biochemistry, 56(14), 1987-2000. doi:10.1021/acs.biochem.7b00040. [PubMan] : Bartholomäus, A., Fedyunin, I., Feist, P., Sin, C., Zhang, G., Valleriani, A., & Ignatova, Z. (2016). Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences, 374(2063): 20150069. doi:10.1098/rsta.2015.0069. [PubMan] : Sin, C., Chiarugi, D., & Valleriani, A. (2016). Quantitative assessment of ribosome drop-off in E. coli. Nucleic Acids Research, 44(6), 2528-2537. doi:10.1093/nar/gkw137. [PubMan] : Rusconi, M., & Valleriani, A. (2016). Predict or classify: the deceptive role of time-locking in brain signal classification. Scientific Reports, 6: 28236. doi:10.1038/srep28236. [PubMan] : Sin, C., Chiarugi, D., & Valleriani, A. (2016). Degradation parameters from pulse-chase experiments. PLoS One, 11(5): e0155028. doi:10.1371/journal.pone.0155028. [PubMan] : McShane, E., Sin, C., Zauber, H., Wells, J., Donnelly, N., Wang, X., Hou, J., Chen, W., Storchova, Z., Marsh, J., Valleriani, A., & Selbach, M. (2016). Kinetic analysis of protein stability reveals age-dependent degradation. Cell, 167(3), 803-815.e21. doi:10.1016/j.cell.2016.09.015. [PubMan] : Valleriani, A. (2016). A conditional likelihood is required to estimate the selection coefficient in ancient DNA. Scientific Reports, 6: 31561. doi:10.1038/srep31561. [PubMan] : Keller, P., Rœlly, S., & Valleriani, A. (2015). On time duality for Markov chains. Stochastic Models, 31(1), 98-118. doi:10.1080/15326349.2014.969736. [PubMan] : Valleriani, A. (2015). Circular analysis in complex stochastic systems. Scientific Reports, 5: 17986. doi:10.1038/srep17986. [PubMan] : Keller, P., Rœlly, S., & Valleriani, A. (2015). A quasi random walk to model a biological transport process. Methodology and Computing in Applied Probability, 17(1), 125-137. doi:10.1007/s11009-013-9372-5. [PubMan] : Rading, M. M., Sandmann, M., Steup, M., Chiarugi, D., & Valleriani, A. (2015). Weak correlation of starch and volume in synchronized photosynthetic cells. Physical Review E, 91(1): 012711. doi:10.1103/PhysRevE.91.012711. [PubMan]