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  DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

Mathis, A., Mamidanna, P., Cury, A., Abe, T., Murthy, V., Mathis, M., et al. (2018). DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nature Neuroscience, 21(9), 1281-1289. doi:10.1038/s41593-018-0209-y.

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 Urheber:
Mathis, A, Autor
Mamidanna, P, Autor
Cury, AM, Autor
Abe, T, Autor
Murthy, VN, Autor
Mathis, MW, Autor
Bethge, M1, 2, Autor           
Affiliations:
1Research Group Computational Vision and Neuroscience, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497805              
2Max Planck Institute for Biological Cybernetics, Max Planck Society, Spemannstrasse 38, 72076 Tübingen, DE, ou_1497794              

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 Zusammenfassung: Quantifying behavior is crucial for many applications in neuroscience. Videography provides easy methods for the observation and recording of animal behavior in diverse settings, yet extracting particular aspects of a behavior for further analysis can be highly time consuming. In motor control studies, humans or other animals are often marked with reflective markers to assist with computer-based tracking, but markers are intrusive, and the number and location of the markers must be determined a priori. Here we present an efficient method for markerless pose estimation based on transfer learning with deep neural networks that achieves excellent results with minimal training data. We demonstrate the versatility of this framework by tracking various body parts in multiple species across a broad collection of behaviors. Remarkably, even when only a small number of frames are labeled (~200), the algorithm achieves excellent tracking performance on test frames that is comparable to human accuracy.

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 Datum: 2018-082018-09
 Publikationsstatus: Erschienen
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 Identifikatoren: DOI: 10.1038/s41593-018-0209-y
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Titel: Nature Neuroscience
  Andere : Nat. Neurosci.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: New York, NY : Nature America Inc.
Seiten: - Band / Heft: 21 (9) Artikelnummer: - Start- / Endseite: 1281 - 1289 Identifikator: ISSN: 1097-6256
CoNE: https://pure.mpg.de/cone/journals/resource/954925610931