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Free keywords:
Calmodulin;
chemical cross-linking; ion
mobility; mass spectrometry;
Munc13; photoaffinity
labeling; structural
proteomics; synapse;
synaptic vesicle cycle
Abstract:
Introduction: Calmodulin (CaM) is a highly conserved Ca2+-binding protein that is exceptionally abundant in the brain. In the presynaptic compartment of neurons, CaM transduces changes in Ca2+
concentration into the regulation of synaptic transmission dynamics.
Areas covered: We review selected literature including published CaM interactor screens and outlineestablished and candidate presynaptic CaM targets. We present a workflow of biochemical andstructural proteomic methods that were used to identify and characterize the interactions between CaM and Munc13 proteins. Finally, we outline the potential of ion mobility-mass spectrometry (IM-MS) for conformational screening and of protein-protein cross-linking for the structural characterization of CaM complexes.
Expert commentary: Cross-linking/MS and native MS can be applied with considerable throughput to protein mixtures under near-physiological conditions, and thus effectively complement high-resolution
structural biology techniques. Experimental distance constraints are applicable best when obtained by combining different cross-linking strategies, i.e. by using cross-linkers with different spacer length and reactivity, and by using the incorporation of unnatural photo-reactive amino acids. Insights from structural proteomics can be used to generate CaM-insensitive mutants of CaM targets for functional studies in vitro or ideally in vivo.
