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  Combinatorics of periods in strings

Rivals, E., & Rahmann, S. (2003). Combinatorics of periods in strings. Journal of Combinatorial Theory Series A, 104(1), 95-113. doi:10.1016/S0097-3165(03)00123-7.

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Genre: Journal Article
Alternative Title : J. Comb. Theory Ser. A

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 Creators:
Rivals, Eric, Author
Rahmann, Sven1, Author           
Affiliations:
1Dept. of Computational Molecular Biology (Head: Martin Vingron), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433547              

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Free keywords: autocorrelation; strings; periods; lattice
 Abstract: We consider the set Γn of all period sets of strings of length n over a finite alphabet. We show that there is redundancy in period sets and introduce the notion of an irreducible period set. We prove that Γn is a lattice under set inclusion and does not satisfy the Jordan–Dedekind condition. We propose the first efficient enumeration algorithm for Γn and improve upon the previously known asymptotic lower bounds on the cardinality of Γn. Finally, we provide a new recurrence to compute the number of strings sharing a given period set, and exhibit an algorithm to sample uniformly period sets through irreducible period set.

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Language(s): eng - English
 Dates: 2003-10
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 176222
ISI: 000186552200006
DOI: 10.1016/S0097-3165(03)00123-7
 Degree: -

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Title: Journal of Combinatorial Theory Series A
  Alternative Title : J. Comb. Theory Ser. A
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: -
Pages: - Volume / Issue: 104 (1) Sequence Number: - Start / End Page: 95 - 113 Identifier: ISSN: 0097-3165