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  A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

MacArthur, D. G., Balasubramanian, S., Frankish, A., 1000 Genomes Project, C., Sudbrak, R., Albrecht, M. W., et al. (2012). A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes. Science, 335(6070), 823-828. doi:10.1126/science.1215040.

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McArthur.pdf (Verlagsversion), 867KB
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© 2012 American Association for the Advancement of Science
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MacArthur, D. G. , Autor
Balasubramanian, S., Autor
Frankish, A. , Autor
1000 Genomes Project, Consortium, Autor
Sudbrak, R.1, Autor           
Albrecht , M. W., Autor
Amstislavskiy, V.2, Autor           
Borodina, T. A.3, Autor           
Dahl, Andreas1, Autor           
Davydov, A.3, Autor           
Herwig, R.4, Autor           
Marquardt, P.5, Autor           
Mertes, F.1, Autor           
Nietfeld, W.1, Autor           
Parkhomchuk, D.1, Autor           
Soldatov, A.3, Autor           
Timmermann, B.6, Autor           
Tolzmann, M.5, Autor           
Lehrach, H.1, Autor           
Affiliations:
1Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433550              
2Gene Regulation and Systems Biology of Cancer (Marie-Laure Yaspo), Independent Junior Research Groups (OWL), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_2117287              
3Technology Development(Alexey Soldatov), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479657              
4Bioinformatics (Ralf Herwig), Dept. of Computational Molecular Biology (Head: Martin Vingron), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479648              
5Computing (Head: Donald Buczek/Peter Marquardt), Scientific Service (Head: Christoph Krukenkamp), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479667              
6Sequencing (Head: Bernd Timmermann), Scientific Service (Head: Christoph Krukenkamp), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479670              

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 Zusammenfassung: Genome-sequencing studies indicate that all humans carry many genetic variants predicted to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy in the human genome. Here we apply stringent filters to 2951 putative LoF variants obtained from 185 human genomes to determine their true prevalence and properties. We estimate that human genomes typically contain ~100 genuine LoF variants with ~20 genes completely inactivated. We identify rare and likely deleterious LoF alleles, including 26 known and 21 predicted severe disease – causing variants, as well as common LoF variants in nonessential genes. We describe functional and evolutionary differences between LoF-tolerant and recessive disease genes and a method for using these differences to prioritize ca ndidate genes found in clinical sequencing studies

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Sprache(n): eng - English
 Datum: 2012-02-17
 Publikationsstatus: Erschienen
 Seiten: 6
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: -
 Identifikatoren: DOI: 10.1126/science.1215040
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Titel: Science
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: Washington, D.C. : American Association for the Advancement of Science
Seiten: - Band / Heft: 335 (6070) Artikelnummer: - Start- / Endseite: 823 - 828 Identifikator: ISSN: 0036-8075
CoNE: https://pure.mpg.de/cone/journals/resource/991042748276600_1