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  Low-dose cryo electron ptychography via non-convex Bayesian optimization

Pelz, P., Qiu, W. X., Bücker, R., Kassier, G., & Miller, R. J. D. (2017). Low-dose cryo electron ptychography via non-convex Bayesian optimization. Scientific Reports, 7: 9883. doi:10.1038/s41598-017-07488-y.

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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.
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https://dx.doi.org/10.1038/s41598-017-07488-y (Verlagsversion)
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 Urheber:
Pelz, Philipp1, 2, Autor           
Qiu, Wen Xuan3, Autor
Bücker, Robert1, Autor           
Kassier, Günther1, Autor           
Miller, R. J. Dwayne1, 3, Autor           
Affiliations:
1Miller Group, Atomically Resolved Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_1938288              
2Department of Physics, University of Hamburg, Hamburg, 22761, Germany, ou_persistent22              
3Departments of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, M5S 1H6, Canada, ou_persistent22              

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Schlagwörter: Cryoelectron microscopy; Imaging techniques; Phase-contrast microscopy; Scanning electron microscopy; Single-molecule biophysics
 Zusammenfassung: Electron ptychography has seen a recent surge of interest for phase sensitive imaging at atomic or near-atomic resolution. However, applications are so far mainly limited to radiation-hard samples, because the required doses are too high for imaging biological samples at high resolution. We propose the use of non-convex Bayesian optimization to overcome this problem, and show via numerical simulations that the dose required for successful reconstruction can be reduced by two orders of magnitude compared to previous experiments. As an important application we suggest to use this method for imaging single biological macromolecules at cryogenic temperatures and demonstrate 2D single-particle reconstructions from simulated data with a resolution up to 5.4 Å at a dose of 20e−/Å2. When averaging over only 30 low-dose datasets, a 2D resolution around 3.5 Å is possible for macromolecular complexes even below 100 kDa. With its independence from the microscope transfer function, direct recovery of phase contrast, and better scaling of signal-to-noise ratio, low-dose cryo electron ptychography may become a promising alternative to Zernike phase-contrast microscopy.

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Sprache(n): eng - English
 Datum: 2017-02-172017-06-272017-08-29
 Publikationsstatus: Online veröffentlicht
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 Ort, Verlag, Ausgabe: -
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 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41598-017-07488-y
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Titel: Scientific Reports
  Kurztitel : Sci. Rep.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London, UK : Nature Publishing Group
Seiten: - Band / Heft: 7 Artikelnummer: 9883 Start- / Endseite: - Identifikator: ISSN: 2045-2322
CoNE: https://pure.mpg.de/cone/journals/resource/2045-2322