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  Childhood gene-environment interactions and age-dependent effects of genetic variants associated with refractive error and myopia: The CREAM Consortium

Fan, Q., Guo, X., Tideman, J. W. L., Williams, K. M., Yazar, S., Hosseini, S. M., et al. (2016). Childhood gene-environment interactions and age-dependent effects of genetic variants associated with refractive error and myopia: The CREAM Consortium. Scientific Reports, 6: 25853. doi:10.1038/srep25853.

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This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
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 Creators:
Fan, Q.1, Author
Guo, X.2, Author
Tideman, J. W. L.3, Author
Williams, K. M.4, Author
Yazar, S.5, Author
Hosseini, S. M.6, Author
Howe, L. D.7, Author
St Pourcain, Beate1, 7, 8, 9, Author           
Evans, D. M.7, 10, Author
Timpson, N. J.7, Author
McMahon, G.7, Author
Hysi, P. G.4, Author
Krapohl, E.4, Author
Wang, Y. X.11, 12, Author
Jonas, J. B.11, 12, 13, Author
Baird, P. N.14, Author
Wang, J. J.14, 15, Author
Cheng, C. Y.16, 17, Author
Teo, Y. Y.16, Author
Wong, T. Y.16, 17, Author
Ding, X.2, AuthorWojciechowski, R.18, 19, AuthorYoung, T. L.1, 20, AuthorParssinen, O.21, 22, AuthorOexle, K.23, AuthorPfeiffer, N.24, AuthorBailey-Wilson, J. E.19, AuthorPaterson, A. D.6, AuthorKlaver, C. C. W.3, AuthorPlomin, R.4, AuthorHammond, C. J.4, AuthorMackey, D. A.5, 14, AuthorHe, M. G.2, 14, AuthorSaw, S. M.16, 17, AuthorWilliams, C.7, AuthorGuggenheim, J. A.25, AuthorCream, Consortium, Author more..
Affiliations:
1Duke NUS Medial Sch, Ctr Quantitat Med, Singapore, Singapore, ou_persistent22              
2Sun Yat Sen University,Guangzhou, Peoples R China , ou_persistent22              
3Erasmus University Rotterdaml, Rotterdam, Netherlands , ou_persistent22              
4Kings Coll London, University of London, London WC2R 2LS, England, ou_persistent22              
5University of Western Australia, Lions Eye Inst, Ctr Ophthalmol & Visual Sci, Perth, WA 6009, Australia , ou_persistent22              
6Univ Toronto, Toronto, ON M5G 1X8, Canada , ou_persistent22              
7University of Bristol, Bristol, Avon, England , ou_persistent22              
8Language and Genetics Department, MPI for Psycholinguistics, Max Planck Society, ou_792549              
9Population genetics of human communication, MPI for Psycholinguistics, Max Planck Society, Wundtlaan 1, 6525 XD Nijmegen, NL, ou_2579694              
10University of Queensland, Brisbane, Qld, Australia , ou_persistent22              
11Capital Medical University, Beijing Tongren Hosp, Beijing Inst Ophthalmol, Beijing, Peoples R China , ou_persistent22              
12Beijing Ophthalmol & Visual Sci Key Lab, Beijing, Peoples R China, ou_persistent22              
13Heidelberg Univ, Med Fac Mannheim, Dept Ophthalmol, Mannheim, Germany, ou_persistent22              
14University of Melbourne, Melbourne, Australia, ou_persistent22              
15University of Sydney, Sydney, Australia, ou_persistent22              
16National University of Singapore, Singapore, Singapore, ou_persistent22              
17Singapore National Eye Centre, Singapore, Singapore, ou_persistent22              
18Johns Hopkins School of Medicine, Baltimore, MD, USA, ou_persistent22              
19National Institutes of Health, Baltimore, MD, USA, ou_persistent22              
20University of Wisconsin-Madison, Madison, WI, USA, ou_persistent22              
21University of Jyväskylä, Jyväskylä, Finland, ou_persistent22              
22Central Hospital of Central Finland, Jyväskylä, Finland, ou_persistent22              
23Technical University of Munich, Munich, Germany, ou_persistent22              
24University Medical Center Mainz, Mainz, Germany, ou_persistent22              
25Cardiff University, Cardiff, UK, ou_persistent22              

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 Abstract: Myopia, currently at epidemic levels in East Asia, is a leading cause of untreatable visual impairment. Genome-wide association studies (GWAS) in adults have identified 39 loci associated with refractive error and myopia. Here, the age-of-onset of association between genetic variants at these 39 loci and refractive error was investigated in 5200 children assessed longitudinally across ages 7-15 years, along with gene-environment interactions involving the major environmental risk-factors, nearwork and time outdoors. Specific variants could be categorized as showing evidence of: (a) early-onset effects remaining stable through childhood, (b) early-onset effects that progressed further with increasing age, or (c) onset later in childhood (N = 10, 5 and 11 variants, respectively). A genetic risk score (GRS) for all 39 variants explained 0.6% (P = 6.6E-08) and 2.3% (P = 6.9E-21) of the variance in refractive error at ages 7 and 15, respectively, supporting increased effects from these genetic variants at older ages. Replication in multi-ancestry samples (combined N = 5599) yielded evidence of childhood onset for 6 of 12 variants present in both Asians and Europeans. There was no indication that variant or GRS effects altered depending on time outdoors, however 5 variants showed nominal evidence of interactions with nearwork (top variant, rs7829127 in ZMAT4; P = 6.3E-04).

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Language(s): eng - English
 Dates: 2016
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1038/srep25853
 Degree: -

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Title: Scientific Reports
  Abbreviation : Sci. Rep.
Source Genre: Journal
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Publ. Info: London, UK : Nature Publishing Group
Pages: - Volume / Issue: 6 Sequence Number: 25853 Start / End Page: - Identifier: Other: 2045-2322
CoNE: https://pure.mpg.de/cone/journals/resource/2045-2322