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  MMseqs2 desktop and local web server app for fast, interactive sequence searches.

Mirdita, M., Steinegger, M., & Söding, J. (2019). MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, (in press). doi:10.1093/bioinformatics/bty1057.

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Item Permalink: https://hdl.handle.net/21.11116/0000-0002-BDBA-8 Version Permalink: https://hdl.handle.net/21.11116/0000-0003-D424-5
Genre: Journal Article

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3017752.pdf (Preprint), 195KB
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 Creators:
Mirdita, M.1, Author           
Steinegger, M.1, Author           
Söding, J.1, Author           
Affiliations:
1Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society, ou_1933286              

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 Abstract: Summary:

The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2's runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST.
Availability and implementation:

The app is easy to install for non-experts. GPLv3-licensed code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.

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Language(s): eng - English
 Dates: 2019-01-07
 Publication Status: Published online
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 Rev. Type: Peer
 Identifiers: DOI: 10.1093/bioinformatics/bty1057
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: - Sequence Number: (in press) Start / End Page: - Identifier: -