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  Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, K., Ullrich, K. K., Liepelt, S., Rensing, S. A., Zhou, J., Ziegenhagen, B., et al. (2016). Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst). Conservation Genetics Resources, 8(2), 105-107. doi:10.1007/s12686-016-0520-4.

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 Creators:
Heer, Katrin, Author
Ullrich, Kristian K.1, Author           
Liepelt, Sascha, Author
Rensing, Stefan A., Author
Zhou, Jiabin, Author
Ziegenhagen, Birgit, Author
Opgenoorth, Lars, Author
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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Free keywords: RNA-seq; Single nucleotide polymorphism; Norway spruce; Genotyping
 Abstract: A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees from the Bavarian Forest National Park in Germany (BaFoNP). SNPs were identified by mapping against a de-novo transcriptome assembly and against pre-mRNAs of predicted genes of the reference genome assembly. This resulted in 111,849 and 366,577 SNPs, respectively. Out of these, 311 were either randomly selected or chosen because of their pronounced divergence between sampling sites and genotyped in 218 trees with an Illumina Infinium HD iSelect BeadChip.

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Language(s): eng - English
 Dates: 2015-12-152016-01-222016-01-27
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1007/s12686-016-0520-4
 Degree: -

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Title: Conservation Genetics Resources
Source Genre: Journal
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Affiliations:
Publ. Info: Springer
Pages: - Volume / Issue: 8 (2) Sequence Number: - Start / End Page: 105 - 107 Identifier: Other: 1877-7252
CoNE: https://pure.mpg.de/cone/journals/resource/1877-7252