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  Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

Duong, N. T., Macholdt, E., Ton, N. D., Arias Alvis, L., Schröder, R., Phong, N. V., et al. (2018). Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. Scientific Reports, 8: 11651. doi:10.1038/s41598-018-29989-0.

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Duong_Complete_SciRep_2018.pdf (Verlagsversion), 8MB
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2018
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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Cre- ative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not per- mitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Duong, Nguyen Thuy, Autor
Macholdt, Enrico1, 2, Autor           
Ton, Nguyen Dang, Autor
Arias Alvis, Leonardo1, 2, Autor           
Schröder, Roland1, Autor           
Phong, Nguyen Van, Autor
Thuy, Vo Thi Bich, Autor
Ha, Nguyen Hai, Autor
Hue, Huynh Thi Thu, Autor
Xuan, Nguyen Thi, Autor
Oanh, Kim Thi Phuong, Autor
Hien, Le Thi Thu, Autor
Hoang, Nguyen Huy, Autor
Pakendorf, Brigitte, Autor
Stoneking, Mark1, Autor           
Hai, Nong Van, Autor
Affiliations:
1Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society, ou_1497672              
2The Leipzig School of Human Origins (IMPRS), Max Planck Institute for Evolutionary Anthropology, Max Planck Society, Deutscher Platz 6, 04103 Leipzig, DE, ou_1497688              

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Schlagwörter: Mitochondrial-DNA; East-Asia; Japanese Population; Genetic-Structure; Control-Region; New-World; Diversity; Lineages; Polymorphism; Dispersals
 Zusammenfassung: Vietnam is an important crossroads within Mainland Southeast Asia (MSEA) and a gateway to Island Southeast Asia, and as such exhibits high levels of ethnolinguistic diversity. However, comparatively few studies have been undertaken of the genetic diversity of Vietnamese populations. In order to gain comprehensive insights into MSEA mtDNA phylogeography, we sequenced 609 complete mtDNA genomes from individuals belonging to five language families (Austroasiatic, Tai-Kadai, Hmong-Mien, Sino-Tibetan and Austronesian) and analyzed them in comparison with sequences from other MSEA countries and Taiwan. Within Vietnam, we identified 399 haplotypes belonging to 135 haplogroups; among the five language families, the sequences from Austronesian groups differ the most from the other groups. Phylogenetic analysis revealed 111 novel Vietnamese mtDNA lineages. Bayesian estimates of coalescence times and associated 95% HPD for these show a peak of mtDNA diversification around 2.5–3 kya, which coincides with the Dong Son culture, and thus may be associated with the agriculturally-driven expansion of this culture. Networks of major MSEA haplogroups emphasize the overall distinctiveness of sequences from Taiwan, in keeping with previous studies that suggested at most a minor impact of the Austronesian expansion from Taiwan on MSEA. We also see evidence for population expansions across MSEA geographic regions and language families.

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Sprache(n): eng - English
 Datum: 2018-08-03
 Publikationsstatus: Online veröffentlicht
 Seiten: 13
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41598-018-29989-0
 Art des Abschluß: -

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Titel: Scientific Reports
  Kurztitel : Sci. Rep.
Genre der Quelle: Zeitschrift
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Affiliations:
Ort, Verlag, Ausgabe: London, UK : Nature Publishing Group
Seiten: - Band / Heft: 8 Artikelnummer: 11651 Start- / Endseite: - Identifikator: ISSN: 2045-2322