Minimum information about a marker gene sequence (MIMARKS) and minimum 
information about any (x) sequence (MIxS) specifications

Yilmaz, P.; Kottmann, R.; Field, D.; Knight, R.; Cole, J. R.; Amaral-Zettler, L.; Gilbert, J. A.; Karsch-Mizrachi, I.; Johnston, A.; Cochrane, G.; Vaughan, R.; Hunter, C.; Park, J.; Morrison, N.; Rocca-Serra, P.; Sterk, P.; Arumugam, M.; Bailey, M.; Baumgartner, L.; Birren, B. W.; Blaser, M. J.; Bonazzi, V.; Booth, T.; Bork, P.; Bushman, F. D.; Buttigieg, P. L.; Chain, P. S. G.; Charlson, E.; Costello, E. K.; Huot-Creasy, H.; Dawyndt, P.; DeSantis, T.; Fierer, N.; Fuhrman, J. A.; Gallery, R. E.; Gevers, D.; Gibbs, R. A.; Gil, I. S.; Gonzalez, A.; Gordon, J. I.; Guralnick, R.; Hankeln, W.; Highlander, S.; Hugenholtz, P.; Jansson, J.; Kau, A. L.; Kelley, S. T.; Kennedy, J.; Knights, D.; Koren, O.; Kuczynski, J.; Kyrpides, N.; Larsen, R.; Lauber, C. L.; Legg, T.; Ley, R. E.; Lozupone, C. A.; Ludwig, W.; Lyons, D.; Maguire, E.; Methe, B. A.; Meyer, F.; Muegge, B.; Nakielny, S.; Nelson, K. E.; Nemergut, D.; Neufeld, J. D.; Newbold, L. K.; Oliver, A. E.; Pace, N. R.; Palanisamy, G.; Peplies, J.; Petrosino, J.; Proctor, L.; Pruesse, E.; Quast, C.; Raes, J.; Ratnasingham, S.; Ravel, J.; Relman, D. A.; Assunta-Sansone, S.; Schloss, P. D.; Schriml, L.; Sinha, R.; Smith, M. I.; Sodergren, E.; Spor, A.; Stombaugh, J.; Tiedje, J. M.; Ward, D. V.; Weinstock, G. M.; Wendel, D.; White, O.; Whiteley, A.; Wilke, A.; Wortman, J. R.; Yatsunenko, T.; Glöckner, F. O.

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29(5), 415-420.

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Item Permalink: https://hdl.handle.net/21.11116/0000-0001-C997-2 Version Permalink: https://hdl.handle.net/21.11116/0000-0007-6CE8-B

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Yilmaz, P.¹, Author
Kottmann, R.¹, Author
Field, D., Author
Knight, R., Author
Cole, J. R., Author
Amaral-Zettler, L., Author
Gilbert, J. A., Author
Karsch-Mizrachi, I., Author
Johnston, A., Author
Cochrane, G., Author
Vaughan, R., Author
Hunter, C., Author
Park, J., Author
Morrison, N., Author
Rocca-Serra, P., Author
Sterk, P., Author
Arumugam, M., Author
Bailey, M., Author
Baumgartner, L., Author
Birren, B. W., Author
Blaser, M. J., AuthorBonazzi, V., AuthorBooth, T., AuthorBork, P., AuthorBushman, F. D., AuthorButtigieg, P. L.², Author         Chain, P. S. G., AuthorCharlson, E., AuthorCostello, E. K., AuthorHuot-Creasy, H., AuthorDawyndt, P., AuthorDeSantis, T., AuthorFierer, N., AuthorFuhrman, J. A., AuthorGallery, R. E., AuthorGevers, D., AuthorGibbs, R. A., AuthorGil, I. S., AuthorGonzalez, A., AuthorGordon, J. I., AuthorGuralnick, R., AuthorHankeln, W.¹, Author         Highlander, S., AuthorHugenholtz, P., AuthorJansson, J., AuthorKau, A. L., AuthorKelley, S. T., AuthorKennedy, J., AuthorKnights, D., AuthorKoren, O., AuthorKuczynski, J., AuthorKyrpides, N., AuthorLarsen, R., AuthorLauber, C. L., AuthorLegg, T., AuthorLey, R. E., AuthorLozupone, C. A., AuthorLudwig, W., AuthorLyons, D., AuthorMaguire, E., AuthorMethe, B. A., AuthorMeyer, F., AuthorMuegge, B., AuthorNakielny, S., AuthorNelson, K. E., AuthorNemergut, D., AuthorNeufeld, J. D., AuthorNewbold, L. K., AuthorOliver, A. E., AuthorPace, N. R., AuthorPalanisamy, G., AuthorPeplies, J.¹, Author         Petrosino, J., AuthorProctor, L., AuthorPruesse, E.¹, Author         Quast, C.¹, Author         Raes, J., AuthorRatnasingham, S., AuthorRavel, J., AuthorRelman, D. A., AuthorAssunta-Sansone, S., AuthorSchloss, P. D., AuthorSchriml, L., AuthorSinha, R., AuthorSmith, M. I., AuthorSodergren, E., AuthorSpor, A., AuthorStombaugh, J., AuthorTiedje, J. M., AuthorWard, D. V., AuthorWeinstock, G. M., AuthorWendel, D., AuthorWhite, O., AuthorWhiteley, A., AuthorWilke, A., AuthorWortman, J. R., AuthorYatsunenko, T., AuthorGlöckner, F. O.¹, Author          more..

Affiliations:
1Microbial Genomics Group, Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society, ou_2481697
2HGF MPG Joint Research Group for Deep Sea Ecology & Technology, Max Planck Institute for Marine Microbiology, Max Planck Society, ou_2481702

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Abstract: Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences—the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.

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Language(s): eng - English

Dates: Date issued: 2011-05

Publication Status: Issued

Pages: 6

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Table of Contents: -

Rev. Type: Peer

Identifiers: eDoc: 573829
ISI: 000290301700021

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Title: Nature Biotechnology

Abbreviation : Nat. Biotechnol.

Source Genre: Journal

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Publ. Info: New York : Gale Group Inc.

Pages: - Volume / Issue: 29 (5) Sequence Number: - Start / End Page: 415 - 420 Identifier: ISSN: 1087-0156
CoNE: https://pure.mpg.de/cone/journals/resource/954926980065