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  Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure

Storlazzi, C. T., Lonoce, A., Guastadisegni, M. C., Trombetta, D., D'Addabbo, P., Daniele, G., et al. (2010). Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure. Genome Research, 20(9), 1198-1206. doi:10.1101/gr.106252.110.

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Genre: Zeitschriftenartikel
Alternativer Titel : Genome Res.

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Storlazzi, Clelia Tiziana, Autor
Lonoce, Angelo, Autor
Guastadisegni, Maria C., Autor
Trombetta, Domenico, Autor
D'Addabbo, Pietro, Autor
Daniele, Giulia, Autor
L'Abbate, Alberto, Autor
Macchia, Gemma, Autor
Surace, Cecilia, Autor
Kok, Klaas, Autor
Ullmann, Reinhard1, Autor           
Purgato, Stefania, Autor
Palumbo, Orazio, Autor
Carella, Massimo, Autor
Ambros, Peter F., Autor
Rocchi, Mariano, Autor
Affiliations:
1Molecular Cytogenetics (Reinhard Ullmann), Dept. of Human Molecular Genetics (Head: Hans-Hilger Ropers), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479645              

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 Zusammenfassung: Double minutes (dmin) and homogeneously staining regions (hsr) are the cytogenetic hallmarks of genomic amplification in cancer. Different mechanisms have been proposed to explain their genesis. Recently, our group showed that the MYC-containing dmin in leukemia cases arise by excision and amplification (episome model). In the present paper we investigated 10 cell lines from solid tumors showing MYCN amplification as dmin or hsr. Particularly revealing results were provided by the two subclones of the neuroblastoma cell line STA-NB-10, one showing dmin-only and the second hsr-only amplification. Both subclones showed a deletion, at 2p24.3, whose extension matched the amplicon extension. Additionally, the amplicon structure of the dmin and hsr forms was identical. This strongly argues that the episome model, already demonstrated in leukemias, applies to solid tumors as well, and that dmin and hsr are two faces of the same coin. The organization of the duplicated segments varied from very simple (no apparent changes from the normal sequence) to very complex. MYCN was always overexpressed (significantly overexpressed in three cases). The fusion junctions, always mediated by nonhomologous end joining, occasionally juxtaposed truncated genes in the same transcriptional orientation. Fusion transcripts involving NBAS (also known as NAG), FAM49A, BC035112 (also known as NCRNA00276), and SMC6 genes were indeed detected, although their role in the context of the tumor is not clear.

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Sprache(n): eng - English
 Datum: 2010-07-14
 Publikationsstatus: Erschienen
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 Ort, Verlag, Ausgabe: -
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Titel: Genome Research
  Alternativer Titel : Genome Res.
Genre der Quelle: Zeitschrift
 Urheber:
Affiliations:
Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 20 (9) Artikelnummer: - Start- / Endseite: 1198 - 1206 Identifikator: ISSN: 1088-9051