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  Data integration using scanners with SQL output--the bioscanners project at sourceforge

Groth, D., Hartmann, S., Friemel, M., Hill, N., Muller, S., Poustka, A. J., et al. (2010). Data integration using scanners with SQL output--the bioscanners project at sourceforge. Journal of Integrative Bioinformatics, 7(3), e122-e122. doi:10.2390/biecoll-jib-2010-122.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-7C7C-9 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-7C7D-7
Genre: Journal Article
Alternative Title : J Integr Bioinform

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 Creators:
Groth, D., Author
Hartmann, S., Author
Friemel, M.1, Author
Hill, N., Author
Muller, S., Author
Poustka, A. J.2, Author              
Panopoulou, G.2, Author              
Affiliations:
1Max Planck Society, ou_persistent13              
2Evolution and Development (Albert Poustka), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479650              

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Free keywords: Computational Biology/methods; Databases, Factual; Internet; Programming Languages; Statistics as Topic; Time Factors
 Abstract: There is currently no standardized approach for parsing output that the numerous bioinformatical tools generate. Because the framework approach of the Bio-toolkits has some shortcomings, we searched for alternative approaches. To this end, we evaluated scanner generators for various programming languages with respect to their potential of standalone, small and fast applications that can easily delivered on any modern and many ancient operating system. We developed sample applications that generate standard SQL database code and thereby greatly simplify the parsing work of data integration and data analysis. At the sourceforge project page the source code and some binaries for a selection of our applications are freely available at http://bioscanners.sourceforge.net.

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Language(s): eng - English
 Dates: 2010
 Publication Status: Published in print
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 Identifiers: eDoc: 552746
DOI: 10.2390/biecoll-jib-2010-122
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Title: Journal of Integrative Bioinformatics
  Alternative Title : J Integr Bioinform
Source Genre: Journal
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Pages: - Volume / Issue: 7 (3) Sequence Number: - Start / End Page: e122 - e122 Identifier: ISSN: 1613-4516 (Electronic)