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  PSIbase: a database of Protein Structural Interactome map (PSIMAP)

Gong, S., Yoon, G., Jang, I., Bolser, D., Panos, D., Schroeder, M., et al. (2005). PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinformatics, 21(10), 2541-2543. doi:10.1093/bioinformatics/bti366.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-86BB-E Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-86BC-C
Genre: Journal Article

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 Creators:
Gong, Sungsam, Author
Yoon, Giseok, Author
Jang, Insoo, Author
Bolser, Dan, Author
Panos, Dafas, Author
Schroeder, Michael, Author
Choi, Hansol, Author
Cho, Yoobok, Author
Han, Kyungsook, Author
Lee, Sunghoon, Author
Choi, Hwanho, Author
Lappe, Michael1, Author              
Holm, Liisa, Author
Kim, Sangsoo, Author
Oh, Donghoon, Author
Bhak, Jonghwa, Author
Affiliations:
1Independent Junior Research Groups (OWL), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433554              

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 Abstract: Summary: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain–domain and protein–protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.

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Language(s): eng - English
 Dates: 2005-03-03
 Publication Status: Published in print
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 264902
DOI: 10.1093/bioinformatics/bti366
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 21 (10) Sequence Number: - Start / End Page: 2541 - 2543 Identifier: ISSN: 1367-4803