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  OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms

Zehetner, G. (2003). OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Research, 31(13), 3799-3803.

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Genre: Journal Article
Alternative Title : Nucleic Acids Res.

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 Creators:
Zehetner, Guenther1, Author              
Affiliations:
1Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433550              

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 Abstract: OntoBlast allows one to find information about potential functions of proteins by presenting a weighted list of ontology entries associated with similar sequences from completely sequenced genomes identified in a BLAST search. It combines, in a single analysis step, the search for sequence similarities in several species with the association of information stored in ontologies. From each identified ontology term a list of genes, which share the functional annotation, can be retrieved. The OntoBlast function is an integral part of the ‘Ontologies TO GenomeMatrix’ tool which provides an alternative entry point from ontology terms to the Genome–Matrix database. OntoBlast's web interface is accessible on the ‘Ontologies TO GenomeMatrix Gate’ page at http://functionalgenomics.de/ontogate/.

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Language(s): eng - English
 Dates: 2003-07-01
 Publication Status: Published in print
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 175484
ISI: 000183832900114
 Degree: -

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Title: Nucleic Acids Research
  Alternative Title : Nucleic Acids Res.
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: -
Pages: - Volume / Issue: 31 (13) Sequence Number: - Start / End Page: 3799 - 3803 Identifier: ISSN: 0305-1048