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  TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

Schmidt, H. A., Strimmer, K., Vingron, M., & von Haeseler, A. (2002). TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18(3), 502-504.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-8C44-2 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0010-8C45-F
Genre: Journal Article

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 Creators:
Schmidt, Heiko A.1, Author
Strimmer, Korbinian, Author
Vingron, Martin2, Author              
von Haeseler, Arndt, Author
Affiliations:
1Max Planck Society, ou_persistent13              
2Gene regulation (Martin Vingron), Dept. of Computational Molecular Biology (Head: Martin Vingron), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479639              

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 Abstract: Summary: TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol. Biol. Evol. , 13, 964–969, 1996) that provides methods for reconstruction, comparison, and testing of trees and models on DNA as well as protein sequences. To reduce waiting time for larger datasets the tree reconstruction part of the software has been parallelized using message passing that runs on clusters of workstations as well as parallel computers. Availability: http://www.tree-puzzle.de. The program is written in ANSI C. TREE-PUZZLE can be run on UNIX, Windows and Mac systems, including Mac OS X. To run the parallel version of PUZZLE, a Message Passing Interface (MPI) library has to be installed on the system. Free MPI implementations are available on the Web (cf. http://www.lam-mpi.org/mpi/implementations/).

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Language(s): eng - English
 Dates: 2002-03
 Publication Status: Published in print
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 Identifiers: eDoc: 28994
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 18 (3) Sequence Number: - Start / End Page: 502 - 504 Identifier: -