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  Identification of regulatory RNAs in Bacillus subtilis

Irnov, I., Sharma, C. M., Vogel, J., & Winkler, W. C. (2010). Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Research, 38(19), 6637-6651.

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Genre: Journal Article
Alternative Title : Nucleic Acids Res.

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Nucl_Acids_Res_2010_38_6637.pdf (Publisher version), 872KB
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Copyright © The Author(s) 2010. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
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Irnov, Irnov, Author
Sharma, Cynthia Mira1, Author              
Vogel, Jörg1, Author              
Winkler, Wade C., Author
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1Max-Planck Research Group RNA Biology, Max Planck Institute for Infection Biology, Max Planck Society, ou_1664150              

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 Abstract: Post-transcriptional regulatory mechanisms are widespread in bacteria. Interestingly, current published data hint that some of these mechanisms may be non-random with respect to their phylogenetic distribution. Although small, trans-acting regulatory RNAs commonly occur in bacterial genomes, they have been better characterized in Gram-negative bacteria, leaving the impression that they may be less important for Firmicutes. It has been presumed that Gram-positive bacteria, in particular the Firmicutes, are likely to utilize cis-acting regulatory RNAs located within the 5' mRNA leader region more often than trans-acting regulatory RNAs. In this analysis we catalog, by a deep sequencing-based approach, both classes of regulatory RNA candidates for Bacillus subtilis, the model microorganism for Firmicutes. We successfully recover most of the known small RNA regulators while also identifying a greater number of new candidate RNAs. We anticipate these data to be a broadly useful resource for analysis of post-transcriptional regulatory strategies in B. subtilis and other Firmicutes.

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Language(s): eng - English
 Dates: 2010-10
 Publication Status: Published in print
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 Rev. Type: Peer
 Identifiers: eDoc: 529416
ISI: 000283682100035
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Title: Nucleic Acids Research
  Alternative Title : Nucleic Acids Res.
Source Genre: Journal
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Pages: - Volume / Issue: 38 (19) Sequence Number: - Start / End Page: 6637 - 6651 Identifier: ISSN: 0305-1048