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  Estimation of parameters in complex N-15 tracing models by Monte Carlo sampling

Müller, C., Rutting, T., Kattge, J., Laughlin, R. J., & Stevens, R. J. (2007). Estimation of parameters in complex N-15 tracing models by Monte Carlo sampling. Soil Biology and Biochemistry, 39(3), 715-726.

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Müller, C., Author
Rutting, T., Author
Kattge, Jens1, Author           
Laughlin, R. J., Author
Stevens, R. J., Author
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1TRY: Global Initiative on Plant Traits, Dr. J. Kattge, Research Group Organismic Biogeochemistry, Dr. C. Wirth, Max Planck Institute for Biogeochemistry, Max Planck Society, ou_1497793              

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Free keywords: N-15 tracing Model N transformations Metropolis algorithm Monte carlo sampling Markov chain Michaelis-menten kinetics Analyze n transformations Terrestrial ecosystem model Old grassland soil Nitrous-oxide Nitrite Inversion Ammonium Fluxes Rates
 Abstract: The most widely used method to quantify gross N transforination rates in soils is based on N-15 dilution and enrichment principles. To identify rate parameters, N-15-tracing experiments are analysed by models that are linked to algorithins that try to minimize the misfit between modelled and observed data. In Currently available N-15-tracing models optimization algorithms are based oil the Levenberg-Marquardt method that is suitable for the determination of small number of parameters. Therefore, these models are restricted to a few processes. Methods based on Monte Carlo sampling have the potential to overcome restrictions on parameter numbers but have not been tested for application in N-15-tracing models. Here, for the first time, we use a Markov chain Monte Carlo (MCMC) method with a tracing model to simultaneously determine the probability density functions (PDFs) of the whole set of parameters for a previously published data set [Muller, C., Stevens, R.J., Laughlin, R.J., 2004. A N-15 tracing model to analyse N transformations in old grassland soil. Soil Biology & Biochemistry 36, 619-632]. We show that the MCMC method can simultaneously determine PDFs of more than 8 parameters and demonstrate for the first time that it is possible to optimize models where transformations are described by Michaelis-Menten kinetics. Setting the NH4+ oxidation rate to Michaelis-Menten kinetics reduced the misfit by 19%. Together with monitoring diagnostics for parameter convergence, the MCMC method is a very efficient and robust technique to determine PDFs for parameters in N-15-tracing models that Contain large number of N transformations and complex process descriptions. (c) 2006 Elsevier Ltd. All rights reserved. [References: 29]

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 Dates: 2007
 Publication Status: Issued
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 Identifiers: Other: BGC0945
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Title: Soil Biology and Biochemistry
  Other : Soil Biol. Biochem.
Source Genre: Journal
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Publ. Info: Amsterdam [u.a.] : Elsevier
Pages: - Volume / Issue: 39 (3) Sequence Number: - Start / End Page: 715 - 726 Identifier: ISSN: 0038-0717
CoNE: https://pure.mpg.de/cone/journals/resource/954925445690