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  Modular modeling of cellular systems with ProMoT/Diva

Ginkel, M., Kremling, A., Nutsch, T., Rehner, R., & Gilles, E. D. (2003). Modular modeling of cellular systems with ProMoT/Diva. Bioinformatics, 19, 1169-1176. doi:10.1093/bioinformatics/btg128.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0013-9FFB-7 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0027-ADF5-F
Genre: Journal Article

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 Creators:
Ginkel, Martin1, Author              
Kremling, A.1, Author              
Nutsch, T.1, Author              
Rehner, Robert1, Author              
Gilles, E. D.1, Author              
Affiliations:
1Systems Biology, Max Planck Institute for Dynamics of Complex Technical Systems, Max Planck Society, ou_1738155              

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 Abstract: Motivation: Need for software to setup and analyze complex mathematical models for cellular systems in a modular way, that also integrates the experimental environment of the cells. Results: A computer framework is described which allows the building of modularly structured models using an abstract, modular and general modeling methodology. With this methodology, reusable modeling entities are introduced which lead to the development of a modeling library within the modeling tool ProMot. The simulation environment Diva is used for numerical analysis and parameter identification of the models. The simulation environment provides a number of tools and algorithms to simulate and analyze complex biochemical networks. The described tools are the first steps towards an integrated computer-based modeling, simulation and visualization environment. © Oxford University Press 2003 [accessed 2014 February 13th]

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Language(s): eng - English
 Dates: 2003
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 125061
DOI: 10.1093/bioinformatics/btg128
Other: 11/03
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 19 Sequence Number: - Start / End Page: 1169 - 1176 Identifier: ISSN: 1367-4803