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  Data Mining for Biologists

Tsuda, K. (2009). Data Mining for Biologists. In S.-K. Ng, & X.-L. Li (Eds.), Biological Data Mining in Protein Interaction Networks (pp. 14-27). Hershey, PA, USA: Medical Information Science Reference.

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 Creators:
Tsuda, K1, 2, Author              
Affiliations:
1Department Empirical Inference, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497795              
2Max Planck Institute for Biological Cybernetics, Max Planck Society, Spemannstrasse 38, 72076 Tübingen, DE, ou_1497794              

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 Abstract: In this tutorial chapter, we review basics about frequent pattern mining algorithms, including itemset mining, association rule mining and graph mining. These algorithms can find frequently appearing substructures in discrete data. They can discover structural motifs, for example, from mutation data, protein structures and chemical compounds. As they have been primarily used for business data, biological applications are not so common yet, but their potential impact would be large. Recent advances in computers including multicore machines and ever increasing memory capacity support the application of such methods to larger datasets. We explain technical aspects of the algorithms, but do not go into details. Current biological applications are summarized and possible future directions are given.

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 Dates: 2009
 Publication Status: Published in print
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 Rev. Type: -
 Identifiers: BibTex Citekey: 5368
DOI: 10.4018/978-1-60566-398-2.ch002
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Title: Biological Data Mining in Protein Interaction Networks
Source Genre: Book
 Creator(s):
Ng, S-K, Editor
Li, X-L, Editor
Affiliations:
-
Publ. Info: Hershey, PA, USA : Medical Information Science Reference
Pages: - Volume / Issue: - Sequence Number: 2 Start / End Page: 14 - 27 Identifier: ISBN: 978-1-60566-399-9