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  The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

Li, J. W., Robison, K., Martin, M., Sjodin, A., Usadel, B., Young, M., et al. (2012). The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Research, 40(Database issue), D1313-D1317. doi:10.1093/nar/gkr1058.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-1F36-B Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-1F37-9
Genre: Journal Article

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Li-2012-The SEQanswers wiki_.pdf (Any fulltext), 3MB
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 Creators:
Li, J. W.1, Author
Robison, K.1, Author
Martin, M.1, Author
Sjodin, A.1, Author
Usadel, B.2, Author              
Young, M.1, Author
Olivares, E. C.1, Author
Bolser, D. M.1, Author
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1External Organizations, ou_persistent22              
2Integrative Carbon Biology, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753329              

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 Abstract: Recent advances in sequencing technology have created unprecedented opportunities for biological research. However, the increasing throughput of these technologies has created many challenges for data management and analysis. As the demand for sophisticated analyses increases, the development time of software and algorithms is outpacing the speed of traditional publication. As technologies continue to be developed, methods change rapidly, making publications less relevant for users. The SEQanswers wiki (SEQwiki) is a wiki database that is actively edited and updated by the members of the SEQanswers community (http://SEQanswers.com/). The wiki provides an extensive catalogue of tools, technologies and tutorials for high-throughput sequencing (HTS), including information about HTS service providers. It has been implemented in MediaWiki with the Semantic MediaWiki and Semantic Forms extensions to collect structured data, providing powerful navigation and reporting features. Within 2 years, the community has created pages for over 500 tools, with approximately 400 literature references and 600 web links. This collaborative effort has made SEQwiki the most comprehensive database of HTS tools anywhere on the web. The wiki includes task-focused mini-reviews of commonly used tools, and a growing collection of more than 100 HTS service providers. SEQwiki is available at: http://wiki.SEQanswers.com/.

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Language(s): eng - English
 Dates: 2011-11-172012
 Publication Status: Published in print
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Title: Nucleic Acids Research
Source Genre: Journal
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Pages: - Volume / Issue: 40 (Database issue) Sequence Number: - Start / End Page: D1313 - D1317 Identifier: -