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  Integration of a Systems Biological Network Analysis and QTL Results for Biomass Heterosis in Arabidopsis thaliana

Andorf, S., Meyer, R. C., Selbig, J., Altmann, T., & Repsilber, D. (2012). Integration of a Systems Biological Network Analysis and QTL Results for Biomass Heterosis in Arabidopsis thaliana. PLoS One, 7(11), e49951. doi:10.1371/journal.pone.0049951.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-2071-F Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-2072-D
Genre: Journal Article

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 Creators:
Andorf, S.1, Author
Meyer, R. C.2, Author              
Selbig, J.3, Author              
Altmann, T.2, Author              
Repsilber, D.3, Author              
Affiliations:
1External Organizations, ou_persistent22              
2Developmental Physiology and Genomics, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753313              
3BioinformaticsCRG, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753315              

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Free keywords: gene-expression maize yield plant loci
 Abstract: To contribute to a further insight into heterosis we applied an integrative analysis to a systems biological network approach and a quantitative genetics analysis towards biomass heterosis in early Arabidopsis thaliana development. The study was performed on the parental accessions C24 and Col-0 and the reciprocal crosses. In an over-representation analysis it was tested if the overlap between the resulting gene lists of the two approaches is significantly larger than expected by chance. Top ranked genes in the results list of the systems biological analysis were significantly over-represented in the heterotic QTL candidate regions for either hybrid as well as regarding mid-parent and best-parent heterosis. This suggests that not only a few but rather several genes that influence biomass heterosis are located within each heterotic QTL region. Furthermore, the overlapping resulting genes of the two integrated approaches were particularly enriched in biomass related pathways. A chromosome-wise over-representation analysis gave rise to the hypothesis that chromosomes number 2 and 4 probably carry a majority of the genes involved in biomass heterosis in the early development of Arabidopsis thaliana.

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Language(s): eng - English
 Dates: 2012
 Publication Status: Published in print
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 Rev. Type: -
 Identifiers: ISI: ISI:000311885300075
DOI: 10.1371/journal.pone.0049951
ISSN: 1932-6203
URI: ://000311885300075 http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0049951&representation=PDF
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Title: PLoS One
Source Genre: Journal
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Pages: - Volume / Issue: 7 (11) Sequence Number: - Start / End Page: e49951 Identifier: -