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  Modeling RNA loops using sequence homology and geometric constraints

Schudoma, C., May, P., & Walther, D. (2010). Modeling RNA loops using sequence homology and geometric constraints. Bioinformatics, 26(13), 1671-1672. doi:10.1093/bioinformatics/btq236.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-2339-A Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-233A-8
Genre: Journal Article

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Schudoma-2010-Modeling RNA loops u.pdf (Any fulltext), 98KB
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 Creators:
Schudoma, C.1, Author              
May, P.1, Author              
Walther, D.1, Author              
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1BioinformaticsCIG, Infrastructure Groups and Service Units, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753303              

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Free keywords: database prediction
 Abstract: RNA loop regions are essential structural elements of RNA molecules influencing both their structural and functional properties. We developed RLooM, a web application for homology-based modeling of RNA loops utilizing template structures extracted from the PDB. RLooM allows the insertion and replacement of loop structures of a desired sequence into an existing RNA structure. Furthermore, a comprehensive database of loops in RNA structures can be accessed through the web interface.

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Language(s): eng - English
 Dates: 2010
 Publication Status: Published in print
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 Identifiers: ISI: ISI:000278967500016
DOI: 10.1093/bioinformatics/btq236
ISSN: 1367-4803
URI: ://000278967500016 http://bioinformatics.oxfordjournals.org/content/26/13/1671.full.pdf
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 26 (13) Sequence Number: - Start / End Page: 1671 - 1672 Identifier: -