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  PInTFDB: updated content and new features of the plant transcription factor database

Perez-Rodriguez, P., Riano-Pachon, D. M., Correa, L. G. G., Rensing, S. A., Kersten, B., & Mueller-Roeber, B. (2010). PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Research, 38, D822-D827. doi:10.1093/Nar/Gkp805.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-237A-7 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-237B-5
Genre: Journal Article

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 Creators:
Perez-Rodriguez, P.1, Author
Riano-Pachon, D. M.2, Author              
Correa, L. G. G.3, Author              
Rensing, S. A.1, Author
Kersten, B.4, Author              
Mueller-Roeber, B.3, Author              
Affiliations:
1External Organizations, ou_persistent22              
2BioinformaticsCRG, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753315              
3Plant Signalling, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753311              
4BioinformaticsCIG, Infrastructure Groups and Service Units, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753303              

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Free keywords: genome-wide analysis factor gene family cyanidioschyzon-merolae information resource arabidopsis-thaliana rice evolution sequence platform reveals
 Abstract: The Plant Transcription Factor Database (PlnTFDB; http://plntfdb.bio.uni-potsdam.de/v3.0/) is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species (sensu lato) whose genomes have been completely sequenced and annotated. The complete sets of 84 families of TFs and TRs from 19 species ranging from unicellular red and green algae to angiosperms are included in PlnTFDB, representing >1.6 billion years of evolution of gene regulatory networks. For each gene family, a basic description is provided that is complemented by literature references, and multiple sequence alignments of protein domains. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online. Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons.

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Language(s): eng - English
 Dates: 2010
 Publication Status: Published in print
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 Identifiers: ISI: ISI:000276399100128
DOI: 10.1093/Nar/Gkp805
ISSN: 0305-1048
URI: ://000276399100128 http://nar.oxfordjournals.org/content/38/suppl_1/D822.full.pdf#page=1&view=FitH
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Title: Nucleic Acids Research
Source Genre: Journal
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Pages: - Volume / Issue: 38 Sequence Number: - Start / End Page: D822 - D827 Identifier: -