English
 
User Manual Privacy Policy Disclaimer Contact us
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT
  Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

Licausi, F., Giorgi, F. M., Zenoni, S., Osti, F., Pezzotti, M., & Perata, P. (2010). Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. BMC Genomics, 11, 719. doi:10.1186/1471-2164-11-719.

Item is

Basic

show hide
Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-23C0-5 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-23C1-3
Genre: Journal Article

Files

show Files
hide Files
:
Licausi-2010-Genomic and transcri.pdf (Any fulltext), 4MB
Name:
Licausi-2010-Genomic and transcri.pdf
Description:
-
Visibility:
Public
MIME-Type / Checksum:
application/pdf / [MD5]
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
License:
-

Locators

show

Creators

show
hide
 Creators:
Licausi, F.1, Author              
Giorgi, F. M.2, Author              
Zenoni, S.3, Author
Osti, F.3, Author
Pezzotti, M.3, Author
Perata, P.3, Author
Affiliations:
1Energy Metabolism, Department Bock, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753325              
2Integrative Carbon Biology, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753329              
3External Organizations, ou_persistent22              

Content

show
hide
Free keywords: DNA-binding domain ethylene-responsive element gene-expression ap2 domain arabidopsis-thaliana low-temperature wide analysis populus-trichocarpa drought tolerance protein
 Abstract: Background: The AP2/ERF protein family contains transcription factors that play a crucial role in plant growth and development and in response to biotic and abiotic stress conditions in plants. Grapevine (Vitis vinifera) is the only woody crop whose genome has been fully sequenced. So far, no detailed expression profile of AP2/ERF-like genes is available for grapevine. Results: An exhaustive search for AP2/ERF genes was carried out on the Vitis vinifera genome and their expression profile was analyzed by Real-Time quantitative PCR (qRT-PCR) in different vegetative and reproductive tissues and under two different ripening stages. One hundred and forty nine sequences, containing at least one ERF domain, were identified. Specific clusters within the AP2 and ERF families showed conserved expression patterns reminiscent of other species and grapevine specific trends related to berry ripening. Moreover, putative targets of group IX ERFs were identified by co-expression and protein similarity comparisons. Conclusions: The grapevine genome contains an amount of AP2/ERF genes comparable to that of other dicot species analyzed so far. We observed an increase in the size of specific groups within the ERF family, probably due to recent duplication events. Expression analyses in different aerial tissues display common features previously described in other plant systems and introduce possible new roles for members of some ERF groups during fruit ripening. The presented analysis of AP2/ERF genes in grapevine provides the bases for studying the molecular regulation of berry development and the ripening process.

Details

show
hide
Language(s): eng - English
 Dates: 2010-12-202010
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: ISI: ISI:000286245400001
DOI: 10.1186/1471-2164-11-719
ISSN: 1471-2164 (Electronic) 1471-2164 (Linking)
URI: ://000286245400001 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022922/pdf/1471-2164-11-719.pdf?tool=pmcentrez
 Degree: -

Event

show

Legal Case

show

Project information

show

Source 1

show
hide
Title: BMC Genomics
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: -
Pages: - Volume / Issue: 11 Sequence Number: - Start / End Page: 719 Identifier: -