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  miSolRNA: A tomato micro RNA relational database

Bazzini, A. A., Asis, R., Gonzalez, V., Bassi, S., Conte, M., Soria, M., et al. (2010). miSolRNA: A tomato micro RNA relational database. Bmc Plant Biology, 10, 240. doi:10.1186/1471-2229-10-240.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-245D-1 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0014-245E-0
Genre: Journal Article

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 Creators:
Bazzini, A. A.1, Author
Asis, R.1, Author
Gonzalez, V.1, Author
Bassi, S.1, Author
Conte, M.1, Author
Soria, M.1, Author
Fernie, A. R.2, Author              
Asurmendi, S.1, Author
Carrari, F.2, Author              
Affiliations:
1External Organizations, ou_persistent22              
2Central Metabolism, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753339              

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Free keywords: interspecific introgression lines arabidopsis-thaliana medicago-truncatula leaf development prediction stress targets mapman plants fruit
 Abstract: Background: The economic importance of Solanaceae plant species is well documented and tomato has become a model for functional genomics studies. In plants, important processes are regulated by microRNAs (miRNA). Description: We describe here a data base integrating genetic map positions of miRNA-targeted genes, their expression profiles and their relations with quantitative fruit metabolic loci and yield associated traits. miSolRNA provides a metadata source to facilitate the construction of hypothesis aimed at defining physiological modes of action of regulatory process underlying the metabolism of the tomato fruit. Conclusions: The MiSolRNA database allows the simple extraction of metadata for the proposal of new hypothesis concerning possible roles of miRNAs in the regulation of tomato fruit metabolism. It permits i) to map miRNAs and their predicted target sites both on expressed (SGN-UNIGENES) and newly annotated sequences (BAC sequences released), ii) to co-locate any predicted miRNA-target interaction with metabolic QTL found in tomato fruits, iii) to retrieve expression data of target genes in tomato fruit along their developmental period and iv) to design further experiments for unresolved questions in complex trait biology based on the use of genetic materials that have been proven to be a useful tools for map-based cloning experiments in Solanaceae plant species.

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Language(s): eng - English
 Dates: 2010-11-082010
 Publication Status: Published in print
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 Identifiers: ISI: ISI:000284695800001
DOI: 10.1186/1471-2229-10-240
ISSN: 1471-2229 (Electronic) 1471-2229 (Linking)
URI: ://000284695800001 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3095322/pdf/1471-2229-10-240.pdf?tool=pmcentrez
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Title: Bmc Plant Biology
Source Genre: Journal
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Pages: - Volume / Issue: 10 Sequence Number: - Start / End Page: 240 Identifier: -