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  GeneCAT - novel webtools that combine BLAST and co-expression analyses

Mutwil, M., Obro, J., Willats, W. G. T., & Persson, S. (2008). GeneCAT - novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Research, 36(Web Server issue), W320-W326. doi:10.1093/Nar/Gkn292.

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Mutwil-2008-GeneCAT - novel webt.pdf (Any fulltext), 4MB
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 Creators:
Mutwil, M.1, 2, Author              
Obro, J.3, Author
Willats, W. G. T.3, Author
Persson, S.1, Author              
Affiliations:
1Plant Cell Walls - Persson, Max Planck Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753318              
2Regulatory Networks, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753332              
3External Organizations, ou_persistent22              

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Free keywords: cellulose synthase complexes secondary cell-wall arabidopsis-thaliana expression analysis tool act database identification biology information resource
 Abstract: The gene co-expression analysis toolbox (GeneCAT) introduces several novel microarray data analyzing tools. First, the multigene co-expression analysis, combined with co-expressed gene networks, provides a more powerful data mining technique than standard, single-gene co-expression analysis. Second, the high-throughput Map-O-Matic tool matches co-expression pattern of multiple query genes to genes present in user-defined subdatabases, and can therefore be used for gene mapping in forward genetic screens. Third, Rosetta combines co-expression analysis with BLAST and can be used to find true gene orthologs in the plant model organisms Arabidopsis thaliana and Hordeum vulgare (Barley). GeneCAT is equipped with expression data for the model plant A. thaliana, and first to introduce co-expression mining tools for the monocot Barley. GeneCAT is available at http://genecat.mpg.de.

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Language(s): eng - English
 Dates: 2008-05-162008
 Publication Status: Published in print
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 Identifiers: ISI: ISI:000258142300060
DOI: 10.1093/Nar/Gkn292
ISSN: 1362-4962 (Electronic) 0305-1048 (Linking)
URI: ://000258142300060 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447783/pdf/gkn292.pdf?tool=pmcentrez
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Title: Nucleic Acids Research
Source Genre: Journal
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Pages: - Volume / Issue: 36 (Web Server issue) Sequence Number: - Start / End Page: W320 - W326 Identifier: -