Deutsch
 
Hilfe Datenschutzhinweis Impressum
  DetailsucheBrowse

Datensatz

DATENSATZ AKTIONENEXPORT
  PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D., et al. (2008). PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research, 36(Database issue), D1015-D1021. doi:10.1093/nar/gkm812.

Item is

Dateien

einblenden: Dateien
ausblenden: Dateien
:
Heazlewood-2008-PhosPhAt_ a database.pdf (beliebiger Volltext), 608KB
Name:
Heazlewood-2008-PhosPhAt_ a database.pdf
Beschreibung:
-
OA-Status:
Sichtbarkeit:
Öffentlich
MIME-Typ / Prüfsumme:
application/pdf / [MD5]
Technische Metadaten:
Copyright Datum:
-
Copyright Info:
-
Lizenz:
-

Externe Referenzen

einblenden:

Urheber

einblenden:
ausblenden:
 Urheber:
Heazlewood, J. L.1, Autor
Durek, P.2, Autor           
Hummel, J.2, 3, Autor           
Selbig, J.3, Autor           
Weckwerth, W.4, Autor           
Walther, D.2, Autor           
Schulze, W. X.5, Autor           
Affiliations:
1External Organizations, ou_persistent22              
2BioinformaticsCIG, Infrastructure Groups and Service Units, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753303              
3BioinformaticsCRG, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753315              
4Integrative Proteomics and Metabolomics, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753334              
5Signalling Proteomics, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753330              

Inhalt

einblenden:
ausblenden:
Schlagwörter: in-vivo phosphorylation mass-spectrometry plasma-membrane signal-transduction receptor kinase 14-3-3 proteins identification phosphoproteomics chromatography information
 Zusammenfassung: The PhosPhAt database provides a resource consolidating our current knowledge of mass spectrometry-based identified phosphorylation sites in Arabidopsis and combines it with phosphorylation site prediction specifically trained on experimentally identified Arabidopsis phosphorylation motifs. The database currently contains 1187 unique tryptic peptide sequences encompassing 1053 Arabidopsis proteins. Among the characterized phosphorylation sites, there are over 1000 with unambiguous site assignments, and nearly 500 for which the precise phosphorylation site could not be determined. The database is searchable by protein accession number, physical peptide characteristics, as well as by experimental conditions (tissue sampled, phosphopeptide enrichment method). For each protein, a phosphorylation site overview is presented in tabular form with detailed information on each identified phosphopeptide. We have utilized a set of 802 experimentally validated serine phosphorylation sites to develop a method for prediction of serine phosphorylation (pSer) in Arabidopsis. An analysis of the current annotated Arabidopsis proteome yielded in 27 782 predicted phosphoserine sites distributed across 17 035 proteins. These prediction results are summarized graphically in the database together with the experimental phosphorylation sites in a whole sequence context. The Arabidopsis Protein Phosphorylation Site Database (PhosPhAt) provides a valuable resource to the plant science community and can be accessed through the following link "http://phosphat.mpimp-golm.mpg.de .

Details

einblenden:
ausblenden:
Sprache(n): eng - English
 Datum: 2007-11-042008
 Publikationsstatus: Erschienen
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: -
 Identifikatoren: ISI: ISI:000252545400177
DOI: 10.1093/nar/gkm812
ISSN: 1362-4962 (Electronic) 0305-1048 (Linking)
URI: ://000252545400177 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238998/pdf/gkm812.pdf?tool=pmcentrez
 Art des Abschluß: -

Veranstaltung

einblenden:

Entscheidung

einblenden:

Projektinformation

einblenden:

Quelle 1

einblenden:
ausblenden:
Titel: Nucleic Acids Research
Genre der Quelle: Zeitschrift
 Urheber:
Affiliations:
Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 36 (Database issue) Artikelnummer: - Start- / Endseite: D1015 - D1021 Identifikator: -