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  A phylogeographic, ecological and genomic analysis of the recent range expansion of the wasp spider Argiope bruennichi

Krehenwinkel, H. (2013). A phylogeographic, ecological and genomic analysis of the recent range expansion of the wasp spider Argiope bruennichi. PhD Thesis, Christian-Albrechts-Universität, Kiel.

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Krehenwinkel, Henrik1, Author           
Tautz, Diethard1, Advisor                 
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1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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 Abstract: Summary of the thesis
Rapid, poleward range expansions are observed for an increasing number of species in the past decades. These distributional changes are commonly attributed to global environmental change. Recent research, however, indicates that genetic adaptation might also play an important role in explaining the success of range expansions. Considering the fast pace of many range expansions, such contemporary evolutionary processes are unlikely to rely on the emergence of new mutations. Instead, standing genetic variation acts as important resource to fuel adaptation. This variation can be present in a population´s gene pool or it is introduced by secondary contact and admixture of formerly isolated genetic lineages. In the past years, ample evidence has been compiled for an association of admixture, adaptation and range expansions for numerous plant and animal species.
Here, I present an analysis of the recent range expansion of the European wasp spider Argiope bruennichi. Originally, this species inhabited the Mediterranean region and warm oceanic climates in France and South-Western Germany. From around 1930 onwards, the spider started expanding its range into increasingly continental climates and can now be found as far north as Finland. This thesis aims to disentangle environmental and genetic factors, involved in the species´ range expansion. In particular, I analyze the interconnection of genetic admixture and invasion success. I approach these questions using population genetic and phylogeographic methods, morphological analyses, ecological experiments and finally whole genome- and transcriptome sequencing.
In chapter one, I conduct a detailed genetic and ecological analysis of the spider´s range expansion. I base this study on a dense sampling of more than 2.000 contemporary specimens. In addition, I include about 500 historical spiders from natural history collections. I present genetic and morphological data, as well as several ecological experiments on thermal tolerance and preference and a reciprocal transplant study. My results indicate that the spider´s range expansion is associated with admixture of formerly isolated genetic lineages from around 1930 onwards. The ecological experiments indicate that invasive spider populations have simultaneously adapted to colder temperatures by shifting their thermal preference and tolerance.
Like many other spider species, Argiope bruennichi has a wide ranging Palearctic distribution. In chapter two, I conduct a phylogeographic survey over the species´ whole range, from the Macaronesian islands over Europe to East Asia. Next to Argiope bruennichi, I include a second widely distributed spider species, the nursery web spider Pisaura mirabilis. The study is based on mitochondrial and nuclear genetic markers. I highlight the importance of outer-European glacial refugia for the wasp spider. I then show the effects of secondary contact in shaping the postglacial genetic structure of the two species. The analysis identifies several instances of incongruent phylogenetic patterns for mitochondrial and nuclear DNA markers, possibly due to recurrent selection on mitochondria.
DNA from natural history collections provides a valuable resource to trace historical genetic changes during range expansions. For that reason, I present an analysis of DNA sequencing and microsatellite genotyping success in historical spider specimens in chapter three. In addition, I exemplarily illustrate the utility of historical specimens to trace historical genetic changes in populations.
In the above chapters, I have presented evidence for admixture leading to differential adaptation in spider populations. However, the functional basis of this adaptation remains unknown. For that reason I embark towards unraveling its genomic architecture in chapter four. Initially, I generate the first available draft genome sequence of a spider species. Based on this data, I analyze genome-wide differences of native and invasive wasp spider populations across an environmental gradient.
Gene regulatory evolution is a possible mechanism to provide the means for rapid contemporary adaptation to environmental stress. For this reason, I conduct a genome-wide gene expression analysis of native and invasive wasp spiders, which have been exposed to temperature stress in chapter five. I discuss the gene expression divergence between Northern and Southern European spiders in relation to the possibility of recent contemporary adaptation.

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Language(s): eng - English
 Dates: 2013-082013-10-022013-10-02
 Publication Status: Issued
 Pages: 201 S.
 Publishing info: Kiel : Christian-Albrechts-Universität
 Table of Contents: Table of Contents
Summary of the thesis ......................................................................................................... 4
Zusammenfassung der Dissertation .................................................................................... 6
General introduction ........................................................................................................... 9
Species ranges, their limits and expansion in a changing world................................. 9
Adaptations and range expansions - Impediments and possibilities ......................... 10
Hybridization – Destructive or creative force? ......................................................... 11
Phylogenetics and phylogeography - Detecting genetic structure and hybridization 13
Detecting the phenotypic consequences of adaptation ............................................. 13
Genomics of adaptation - Detecting its functional signatures and architecture........ 14
The wasp spider Argiope bruennichi - A new model species for studying adaptation in the face of global change ...................................................................................... 17
Summary ................................................................................................................... 19
Chapter 1: Northern range expansion of European populations of the wasp spider Argiope bruennichi is associated with global-warming-correlated genetic admixture and population specific temperature adaptations ..................................................................... 21
1.1 Introduction ............................................................................................................. 21
1.2 Material and methods .............................................................................................. 23
Sample collection and morphological analysis ......................................................... 23
Molecular analysis .................................................................................................... 24
Phylogeographic and population genetic analysis .................................................... 26
Thermal preference tests and reciprocal transplant experiment ............................... 27
1.3 Results ..................................................................................................................... 29
Mitochondrial data .................................................................................................... 29
Microsatellite data ..................................................................................................... 34
SNP data.................................................................................................................... 35
Body size ................................................................................................................... 38
Thermal preference and overwintering ..................................................................... 39
1.4 Discussion ............................................................................................................... 41
Phylogeography of the species.................................................................................. 41
Introgression, admixture and range expansion ......................................................... 42
Adaptation and phenotypic responses ....................................................................... 44
The role of other factors on the species´ invasion success ....................................... 46
1.5 Conclusion .............................................................................................................. 48
Chapter 2: Phylogeographic surveys of two widely distributed Palearctic spider species highlight the importance of extra-European glacial refugia and reveal a pronounced incongruence between nuclear - and mitochondrial markers ........................................... 49
2.1 Introduction ............................................................................................................. 49
2.2 Material and methods .............................................................................................. 51
Sample collection ...................................................................................................... 51
Molecular analysis .................................................................................................... 52
2.3 Results ..................................................................................................................... 53
Mitochondrial data .................................................................................................... 53
Nuclear microsatellites - and SNP loci ..................................................................... 55
Nuclear DNA sequences ........................................................................................... 56
Genetic diversity ....................................................................................................... 57
The nursery web spider Pisaura mirabilis ................................................................ 58
2.4 Discussion ............................................................................................................... 62
Pleistocene isolation and postglacial recolonization in Argiope bruennichi ............ 62
Secondary contact, differential introgression and limits to gene flow in a highly dispersive species ...................................................................................................... 63
The phylogeography of Pisaura mirabilis - differences and similarities with Argiope bruennichi ................................................................................................................. 66
2.5 Summary ................................................................................................................. 68
Chapter 3: An assessment of genotyping success in museum specimens identifies unexpected predictors of DNA integrity and shows an historical increase in genetic diversity in an expansive spider species ........................................................................... 69
3.1 Introduction ............................................................................................................. 69
3.2 Material and methods .............................................................................................. 70
Sample preparation and tests for genotyping success ............................................... 70
Changes of genetic diversity during a range expansion............................................ 72
3.3 Results ..................................................................................................................... 73
Factors, which affect DNA integrity in wet preserved spiders ................................. 73
Changes of genetic diversity during a range expansion............................................ 77
3.4 Discussion ............................................................................................................... 77
Factors, which affect DNA integrity in wet preserved spiders ................................. 77
Changes of genetic diversity during a range expansion............................................ 79
3.5 Conclusion .............................................................................................................. 79
Chapter 4: Whole genome sequencing reveals genetic signatures of ecological differentiation during a contemporary range expansion of a spider species ..................... 80
4.1 Introduction ............................................................................................................. 80
4.2 Material and methods .............................................................................................. 82
Generation of a reference transcriptome from an ontogenetic series ....................... 82
Generation of a wasp spider draft genome ............................................................... 83
Estimation of genomic divergence during a range expansion .................................. 85
A PCR based screen for range-wide genetic differentiation in genomic candidate loci............................................................................................................................ 87
4.3 Results ..................................................................................................................... 88
Reference transcriptome and - genome ..................................................................... 88
Estimation of genomic divergence during a range expansion .................................. 90
A PCR based screen for range-wide genetic differentiation in genomic candidate loci............................................................................................................................ 94
4.4 Discussion ............................................................................................................... 96
Reference genome and transcriptome ....................................................................... 96
Genetic structure, - diversity and introgression ........................................................ 97
Genomic divergence during a recent range expansion ............................................. 98
Clinal allele frequency variation over an environmental gradient .......................... 101
4.5 Outlook ................................................................................................................. 102
Chapter 5: Genome-wide patterns of gene expression divergence and evidence for a thermal niche shift during a contemporary range expansion of a spider species ............ 104
5.1 Introduction ........................................................................................................... 104
5.2 Methods................................................................................................................. 106
Analysis of gene expression divergence ................................................................. 106
Heat and cold tolerance experiments ...................................................................... 109
5.3 Results ................................................................................................................... 110
Heat and cold tolerance experiments ...................................................................... 110
Gene expression analysis ........................................................................................ 112
5.4 Discussion ............................................................................................................. 123
Range expansion, thermal niche shift and ecological divergence of gene expression................................................................................................................................ 123
Differentially expressed genes between Northern and Southern Europe and their possible association with thermal tolerance ............................................................ 125
Condition dependent gene expression within populations...................................... 126
Diapausing as a simple and rapidly evolving adaptation during a range expansion................................................................................................................................ 127
The influence of non-genetic factors on gene expression divergence .................... 128
5.5 Outlook ................................................................................................................. 129
Concluding remarks ........................................................................................................ 130
Acknowledgements ......................................................................................................... 131
References ....................................................................................................................... 132
My contributions to different chapters ............................................................................ 159
Appendix ......................................................................................................................... 160
Curriculum vitae ............................................................................................................. 200
Affidavit .......................................................................................................................... 201
 Rev. Type: -
 Identifiers: Other: Diss/12493
 Degree: PhD

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