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  REPPER-repeats and their periodicities in fibrous proteins.

Gruber, M., Söding, J., & Lupas, A. N. (2005). REPPER-repeats and their periodicities in fibrous proteins. Nucleic Acids Research (London), 33, W239-W243. doi:10.1093/nar/gki405.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0017-EB2B-7 Version Permalink: http://hdl.handle.net/11858/00-001M-0000-0027-C5A1-5
Genre: Journal Article

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 Creators:
Gruber, M.1, Author
Söding, J.2, Author              
Lupas, A. N.1, Author
Affiliations:
1external, ou_persistent22              
2Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society, ou_1933286              

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 Abstract: REPPER (REPeats and their PERiodicities) is an integrated server that detects and analyzes regions with short gapless repeats in protein sequences or alignments. It finds periodicities by Fourier Transform (FTwin) and internal similarity analysis (REPwin). FTwin assigns numerical values to amino acids that reflect certain properties, for instance hydrophobicity, and gives information on corresponding periodicities. REPwin uses self-alignments and displays repeats that reveal significant internal similarities. Both programs use a sliding window to ensure that different periodic regions within the same protein are detected independently. FTwin and REPwin are complemented by secondary structure prediction (PSIPRED) and coiled coil prediction (COILS), making the server a versatile analysis tool for sequences of fibrous proteins. REPPER is available at http://protevo.eb.tuebingen.mpg.de/repper.

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Language(s): eng - English
 Dates: 2005
 Publication Status: Published in print
 Pages: -
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 Rev. Method: Peer
 Identifiers: DOI: 10.1093/nar/gki405
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Title: Nucleic Acids Research (London)
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Source Genre: Journal
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Publ. Info: Oxford : Oxford University Press
Pages: - Volume / Issue: 33 Sequence Number: - Start / End Page: W239 - W243 Identifier: ISSN: 0305-1048
CoNE: https://pure.mpg.de/cone/journals/resource/110992357379342