English
 
Help Privacy Policy Disclaimer
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT
  qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments

Walzer, M., Pernas, L. E., Nasso, S., Bittremieux, W., Nahnsen, S., Kelchtermans, P., et al. (2014). qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments. MOLECULAR & CELLULAR PROTEOMICS, 13(8), 1905-1913. doi:10.1074/mcp.M113.035907.

Item is

Files

show Files
hide Files
:
Mol Cell Proteomics-2014-Walzer-1905-13.pdf (Any fulltext), 2MB
Name:
Mol Cell Proteomics-2014-Walzer-1905-13.pdf
Description:
-
Visibility:
Public
MIME-Type / Checksum:
application/pdf / [MD5]
Technical Metadata:
Copyright Date:
-
Copyright Info:
open access article - Author's Choice
License:
-

Locators

show

Creators

show
hide
 Creators:
Walzer, Mathias1, Author
Pernas, Lucia Espona1, Author
Nasso, Sara1, Author
Bittremieux, Wout1, Author
Nahnsen, Sven1, Author
Kelchtermans, Pieter1, Author
Pichler, Peter1, Author
van den Toorn, Henk W. P.1, Author
Staes, An1, Author
Vandenbussche, Jonathan1, Author
Mazanek, Michael1, Author
Taus, Thomas1, Author
Scheltema, Richard A.2, Author              
Kelstrup, Christian D.1, Author
Gatto, Laurent1, Author
van Breukelen, Bas1, Author
Aiche, Stephan1, Author
Valkenborg, Dirk1, Author
Laukens, Kris1, Author
Lilley, Kathryn S.1, Author
Olsen, Jesper V.1, AuthorHeck, Albert J. R.1, AuthorMechtler, Karl1, AuthorAebersold, Ruedi1, AuthorGevaert, Kris1, AuthorVizcaino, Juan Antonio1, AuthorHermjakob, Henning1, AuthorKohlbacher, Oliver1, AuthorMartens, Lennart1, Author more..
Affiliations:
1external, ou_persistent22              
2Mann, Matthias / Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Max Planck Society, ou_1565159              

Content

show
hide
Free keywords: PERFORMANCE METRICS; PROTEOMICS DATA; STANDARDS; WORKFLOW; SYSTEMS; TANDEM
 Abstract: Quality control is increasingly recognized as a crucial aspect of mass spectrometry based proteomics. Several recent papers discuss relevant parameters for quality control and present applications to extract these from the instrumental raw data. What has been missing, however, is a standard data exchange format for reporting these performance metrics. We therefore developed the qcML format, an XML-based standard that follows the design principles of the related mzML, mzIdentML, mzQuantML, and TraML standards from the HUPO-PSI (Proteomics Standards Initiative). In addition to the XML format, we also provide tools for the calculation of a wide range of quality metrics as well as a database format and interconversion tools, so that existing LIMS systems can easily add relational storage of the quality control data to their existing schema. We here describe the qcML specification, along with possible use cases and an illustrative example of the subsequent analysis possibilities. All information about qcML is available at http://code.google.com/p/qcml.

Details

show
hide
Language(s): eng - English
 Dates: 2014-08
 Publication Status: Published in print
 Pages: 9
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: ISI: 000340592400002
DOI: 10.1074/mcp.M113.035907
 Degree: -

Event

show

Legal Case

show

Project information

show

Source 1

show
hide
Title: MOLECULAR & CELLULAR PROTEOMICS
  Alternative Title : Mol. Cell. Proteomics
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA : AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
Pages: - Volume / Issue: 13 (8) Sequence Number: - Start / End Page: 1905 - 1913 Identifier: ISSN: 1535-9476