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  Evaluation of Parameters Critical for Observing Nucleic Acids Inside Living Xenopus laevis Oocytes by In-Cell NMR Spectroscopy

Hänsel, R., Foldynová-Trantírková, S., Löhr, F., Buck, J., Bongartz, E., Bamberg, E., et al. (2009). Evaluation of Parameters Critical for Observing Nucleic Acids Inside Living Xenopus laevis Oocytes by In-Cell NMR Spectroscopy. Journal of the American Chemical Society, 131(43), 15761-15768. doi:10.1021/ja9052027.

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 Creators:
Hänsel, Robert1, 2, Author
Foldynová-Trantírková, Silvie3, Author
Löhr, Frank1, 2, Author
Buck, Janina2, 4, Author
Bongartz, Eva1, 5, Author           
Bamberg, Ernst1, 5, Author           
Schwalbe, Harald2, 4, Author
Dötsch, Volker1, 2, Author
Trantírek, Lukáš3, Author
Affiliations:
1Institute of Biophysical Chemistry, Goethe-University, 60438 Frankfurt am Main, Germany, ou_persistent22              
2Center for Biomolecular Magnetic Resonance and Cluster of Excellence Macromolecular Complexes, Goethe University, ou_persistent22              
3Biology Centre of the AS CR,vvi and Faculty of Sciences, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic, ou_persistent22              
4Institute for Organic Chemistry and Chemical Biology, Goethe-University, 60438 Frankfurt am Main, Germany, ou_persistent22              
5Department of Biophysical Chemistry, Max Planck Institute of Biophysics, Max Planck Society, ou_2068289              

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Free keywords: Nucleic acids; Genetics; Nuclear magnetic resonance spectroscopy; Degradation; Conformation
 Abstract: In-cell NMR spectroscopy of proteins in different cellular environments is a well-established technique that, however, has not been applied to nucleic acids so far. Here, we show that isotopically labeled DNA and RNA can be observed inside the eukaryotic environment of Xenopus laevis oocytes by in-cell NMR spectroscopy. One limiting factor for the observation of nucleic acids in Xenopus oocytes is their reduced stability. We demonstrate that chemical modification of DNA and RNA can protect them from degradation and can significantly enhance their lifetime. Finally, we show that the imino region of the NMR spectrum is devoid of any oocyte background signals enabling the detection even of isotopically nonlabeled molecules.

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Language(s): eng - English
 Dates: 2009-06-242009-10-132009-11-04
 Publication Status: Issued
 Pages: 8
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1021/ja9052027
PMID: 19824671
 Degree: -

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Title: Journal of the American Chemical Society
  Other : JACS
  Abbreviation : J. Am. Chem. Soc.
Source Genre: Journal
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Affiliations:
Publ. Info: Washington, DC : American Chemical Society
Pages: - Volume / Issue: 131 (43) Sequence Number: - Start / End Page: 15761 - 15768 Identifier: ISSN: 0002-7863
CoNE: https://pure.mpg.de/cone/journals/resource/954925376870