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  Protein structure determination by a combination of long wavelength sulphur phasing and radiation damage induced phasing

Weiss, M. S., Mander, G., Hedderich, R., Diederichs, K., Ermler, U., & Warkentin, E. (2004). Protein structure determination by a combination of long wavelength sulphur phasing and radiation damage induced phasing. Acta Crystallographica Section D-Biological Crystallography, D60, 686-695. doi:10.1107/S0907444904003002.

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 Creators:
Weiss, Manfred S.1, Author
Mander, Gerd2, Author
Hedderich, Rainer2, Author
Diederichs, Kay3, Author
Ermler, Ulrich4, Author                 
Warkentin, Eberhard4, Author           
Affiliations:
1EMBL Hamburg Outstation, c/o DESY, 22603 Hamburg, Germany, ou_persistent22              
2Max-Planck-Institut für terrestrische Mikrobiologie, Karl-von-Frisch-Strasse, D-35043 Marburg, Germany, ou_persistent22              
3Fakultät für Biologie, Universität Konstanz, Box M656, D-78457 Konstanz, Germany, ou_persistent22              
4Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Max Planck Society, ou_2068290              

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Free keywords: DsvC; long-wavelength sulfur phasing; radiation-damage-induced phasing.
 Abstract: The structure of the 115 amino-acid residue protein DsvC was determined based on the anomalous scattering provided by the five S atoms present in the structure. By collecting the diffraction data at a wavelength of 1.9 Å, the anomalous signal provided by the S atoms was enhanced. However, significant radiation damage occurred during the course of the experiment, which led to differences between different parts of the data set. Only by dividing the total data set into five data sets was it possible to obtain phases; these could then be successfully extended to allow structure determination by the automated model-building program ARP/wARP. A computational correction for the radiation damage was found to significantly improve the success rate in determining the heavy-atom substructure and to improve phasing and refinement statistics.

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Language(s): eng - English
 Dates: 2003-10-312004-02-062004
 Publication Status: Issued
 Pages: 10
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1107/S0907444904003002
 Degree: -

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Title: Acta Crystallographica Section D-Biological Crystallography
Source Genre: Journal
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Publ. Info: [Copenhagen, Denmark : Published for the International Union of Crystallography by Munksgaard]
Pages: - Volume / Issue: D60 Sequence Number: - Start / End Page: 686 - 695 Identifier: ISSN: 0907-4449
CoNE: https://pure.mpg.de/cone/journals/resource/954925562619_1