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  Genome-wide association study and mouse expression data identify a highly conserved 32 kb intergenic region between WNT3 and WNT9b as possible susceptibility locus for isolated classic exstrophy of the bladder

Reutter, H., Draaken, M., Pennimpede, T., Wittler, L., Brockschmidt, F. F., Ebert, A. K., et al. (2014). Genome-wide association study and mouse expression data identify a highly conserved 32 kb intergenic region between WNT3 and WNT9b as possible susceptibility locus for isolated classic exstrophy of the bladder. Human Molecular Genetics, 23(20), 5536-5544. doi:10.1093/hmg/ddu259.

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Reutter.pdf (Verlagsversion), 837KB
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 Urheber:
Reutter, H., Autor
Draaken, M., Autor
Pennimpede, T.1, Autor           
Wittler, L.1, Autor           
Brockschmidt, F. F., Autor
Ebert, A. K., Autor
Bartels, E., Autor
Rösch, W., Autor
Boemers, T. M., Autor
Hirsch, K., Autor
Schmiedeke, E., Autor
Meesters, C., Autor
Becker, T., Autor
Stein, R., Autor
Utsch, B., Autor
Mangold, E., Autor
Nordenskjöld, A., Autor
Barker, G., Autor
Kockum, C. C., Autor
Zwink, N., Autor
Homdahl, G., AutorLäckgren, G., AutorJenetzky, E., AutorFeitz, W. F., AutorMarcelis, C., AutorWijers, C. H., AutorVan Rooij, I. A., AutorGearhart, J. P., AutorHerrmann, B. G.1, Autor           Ludwig, M., AutorBoyadjiev, S. A., AutorNöthen, M. M., AutorMattheisen, M., Autor mehr..
Affiliations:
1Dept. of Developmental Genetics (Head: Bernhard G. Herrmann), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433548              

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 Zusammenfassung: Bladder exstrophy-epispadias complex (BEEC), the severe end of the urorectal malformation spectrum, has a profound impact on continence as well as sexual and renal functions. It is widely accepted that for the majority of cases the genetic basis appears to be multifactorial. Here, we report the first study which utilizes genome-wide association methods to analyze a cohort comprising patients presenting the most common BEEC form, classic bladder exstrophy (CBE), to identify common variation associated with risk for isolated CBE. We employed discovery and follow-up samples comprising 218 cases/865 controls and 78 trios in total, all of European descent. Our discovery sample identified a marker near SALL1, showing genome-wide significant association with CBE. However, analyses performed on follow-up samples did not add further support to these findings. We were also able to identify an association with CBE across our study samples (discovery: P = 8.88 × 10−5; follow-up: P = 0.0025; combined: 1.09 × 10−6) in a highly conserved 32 kb intergenic region containing regulatory elements between WNT3 and WNT9B. Subsequent analyses in mice revealed expression for both genes in the genital region during stages relevant to the development of CBE in humans. Unfortunately, we were not able to replicate the suggestive signal for WNT3 and WNT9B in a sample that was enriched for non-CBE BEEC cases (P = 0.51). Our suggestive findings support the hypothesis that larger samples are warranted to identify association of common variation with CBE.

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Sprache(n): eng - English
 Datum: 2014-05-222014-10-15
 Publikationsstatus: Erschienen
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1093/hmg/ddu259
 Art des Abschluß: -

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Titel: Human Molecular Genetics
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: Oxford, England : IRL Press
Seiten: - Band / Heft: 23 (20) Artikelnummer: - Start- / Endseite: 5536 - 5544 Identifikator: ISSN: 0964-6906
CoNE: https://pure.mpg.de/cone/journals/resource/954925581153