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  do_x3dna: A tool to analyze structural fluctuations of dsDNA or dsRNA from molecular dynamics simulations.

Kumar, R., & Grubmüller, H. (2015). do_x3dna: A tool to analyze structural fluctuations of dsDNA or dsRNA from molecular dynamics simulations. Bioinformatics, 31(15), 2583-2585. doi:10.1093/bioinformatics/btv190.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0026-B010-B Version Permalink: http://hdl.handle.net/11858/00-001M-0000-002A-176A-9
Genre: Journal Article

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2139285.pdf (Publisher version), 204KB
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 Creators:
Kumar, R.1, Author              
Grubmüller, H.1, Author              
Affiliations:
1Department of Theoretical and Computational Biophysics, MPI for Biophysical Chemistry, Max Planck Society, ou_578631              

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 Abstract: The do_x3dna package has been developed to analyze the structural fluctuations of DNA or RNA during molecular dynamics simulations. It extends the capability of the 3DNA package to GROMACS MD trajectories and includes new methods to calculate the global-helical axis of DNA and bending fluctuations during simulations. The package also includes a Python module dnaMD to perform and visualize statistical analyses of complex data obtained from the trajectories.

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Language(s): eng - English
 Dates: 2015-04-022015-08-01
 Publication Status: Published in print
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 Rev. Method: Peer
 Identifiers: DOI: 10.1093/bioinformatics/btv190
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 31 (15) Sequence Number: - Start / End Page: 2583 - 2585 Identifier: -