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  SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models

Zi, Z. (2011). SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models. Bioinformatics, 27(7), 1028-1029. doi:10.1093/bioinformatics/btr038.

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Item Permalink: https://hdl.handle.net/11858/00-001M-0000-0027-A135-0 Version Permalink: https://hdl.handle.net/11858/00-001M-0000-0027-A136-E
Genre: Journal Article

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© 2011 Oxford University Press
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 Creators:
Zi, Zhike1, Author           
Affiliations:
1Cell Signaling Dynamics (Zhike Zi), Independent Junior Research Groups (OWL), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_2117284              

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 Abstract: Parameter estimation is crucial for the modeling and dynamic analysis of biological systems. However, implementing parameter estimation is time consuming and computationally demanding. Here, we introduced a parallel parameter estimation tool for Systems Biology Markup Language (SBML)-based models (SBML-PET-MPI). SBML-PET-MPI allows the user to perform parameter estimation and parameter uncertainty analysis by collectively fitting multiple experimental datasets. The tool is developed and parallelized using the message passing interface (MPI) protocol, which provides good scalability with the number of processors.

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Language(s): eng - English
 Dates: 2011-02-082011-04-01
 Publication Status: Issued
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 Rev. Type: Peer
 Identifiers: DOI: 10.1093/bioinformatics/btr038
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Title: Bioinformatics
Source Genre: Journal
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Publ. Info: Oxford : Oxford University Press
Pages: - Volume / Issue: 27 (7) Sequence Number: - Start / End Page: 1028 - 1029 Identifier: ISSN: 1367-4803
CoNE: https://pure.mpg.de/cone/journals/resource/954926969991