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  European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

Tine, M., Kuhl, H., Gagnaire, P.-A., Louro, B., Desmarais, E., Martins, R. S. T., et al. (2014). European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation. Nature Communications, 5(5): 5:5770. doi:10.1038/ncomms6770.

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 Urheber:
Tine, Mbaye, Autor
Kuhl, Heiner1, Autor           
Gagnaire, Pierre-Alexandre, Autor
Louro, Bruno, Autor
Desmarais, Erick, Autor
Martins, Rute S. T., Autor
Hecht, Jochen2, Autor           
Knaust, Florian, Autor
Belkhir, Khalid, Autor
Klages, Sven1, Autor           
Dieterich, Roland, Autor
Stueber, Kurt, Autor
Piferrer, Francesc, Autor
Guinand, Bruno, Autor
Bierne, Nicolas, Autor
Volckaert, Filip A. M., Autor
Bargelloni, Luca, Autor
Power, Deborah M. , Autor
Bonhomme, Francois, Autor
Canario, Adelino V. M., Autor
Reinhardt, Richard3, Autor mehr..
Affiliations:
1Sequencing (Head: Bernd Timmermann), Scientific Service (Head: Christoph Krukenkamp), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1479670              
2Research Group Development & Disease (Head: Stefan Mundlos), Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433557              
3Max Planck Genome-Centre Cologne, ou_persistent22              

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Schlagwörter: Biological sciences Evolution Genetics
 Zusammenfassung: The European sea bass (Dicentrarchus labrax) is a temperate-zone euryhaline teleost of prime importance for aquaculture and fisheries. This species is subdivided into two naturally hybridizing lineages, one inhabiting the north-eastern Atlantic Ocean and the other the Mediterranean and Black seas. Here we provide a high-quality chromosome-scale assembly of its genome that shows a high degree of synteny with the more highly derived teleosts. We find expansions of gene families specifically associated with ion and water regulation, highlighting adaptation to variation in salinity. We further generate a genome-wide variation map through RAD-sequencing of Atlantic and Mediterranean populations. We show that variation in local recombination rates strongly influences the genomic landscape of diversity within and differentiation between lineages. Comparing predictions of alternative demographic models to the joint allele-frequency spectrum indicates that genomic islands of differentiation between sea bass lineages were generated by varying rates of introgression across the genome following a period of geographical isolation.

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Sprache(n): eng - English
 Datum: 2014-11-052014-12-23
 Publikationsstatus: Online veröffentlicht
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/ncomms6770
 Art des Abschluß: -

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Titel: Nature Communications
  Kurztitel : Nat. Commun.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London : Nature Publishing Group
Seiten: - Band / Heft: 5 (5) Artikelnummer: 5:5770 Start- / Endseite: - Identifikator: ISSN: 2041-1723
CoNE: https://pure.mpg.de/cone/journals/resource/2041-1723