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  Pseudo-complementary PNA actuators as reversible switches in dynamic DNA nanotechnology

Ackermann, D., & Famulok, M. (2013). Pseudo-complementary PNA actuators as reversible switches in dynamic DNA nanotechnology. Nucleic acids research, 41(8), 4729-39. doi:10.1093/nar/gkt121.

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Ackermann-2013-Pseudo-complementary.pdf (beliebiger Volltext), 5MB
 
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http://www.ncbi.nlm.nih.gov/pubmed/23444144 (beliebiger Volltext)
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 Urheber:
Ackermann, D., Autor
Famulok, M.1, Autor
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1External Organizations, ou_persistent22              

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Schlagwörter: DNA/chemical synthesis/*chemistry Nanostructures/*chemistry Peptide Nucleic Acids/chemical synthesis/*chemistry Rotaxanes/chemistry
 Zusammenfassung: The structural reorganization of nanoscale DNA architectures is a fundamental aspect in dynamic DNA nanotechnology. Commonly, DNA nanoarchitectures are reorganized by means of toehold-expanded DNA sequences in a strand exchange process. Here we describe an unprecedented, toehold-free switching process that relies on pseudo-complementary peptide nucleic acid (pcPNA) by using a mechanism that involves double-strand invasion. The usefulness of this approach is demonstrated by application of these peptide nucleic acids (PNAs) as switches in a DNA rotaxane architecture. The monomers required for generating the pcPNA were obtained by an improved synthesis strategy and were incorporated into a PNA actuator sequence as well as into a short DNA strand that subsequently was integrated into the rotaxane architecture. Alternate addition of a DNA and PNA actuator sequence allowed the multiple reversible switching between a mobile rotaxane macrocycle and a stationary pseudorotaxane state. The switching occurs in an isothermal process at room temperature and is nearly quantitative in each switching step. pcPNAs can potentially be combined with light- and toehold-based switches, thus broadening the toolbox of orthogonal switching approaches for DNA architectures that open up new avenues in dynamic DNA nanotechnology.

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 Datum: 2013
 Publikationsstatus: Erschienen
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 Ort, Verlag, Ausgabe: -
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 Identifikatoren: Anderer: 23444144
DOI: 10.1093/nar/gkt121
ISSN: 1362-4962 (Electronic)
ISSN: 0305-1048 (Linking)
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Titel: Nucleic acids research
  Alternativer Titel : Nucleic Acids Res.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 41 (8) Artikelnummer: - Start- / Endseite: 4729 - 39 Identifikator: -