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  Mapping of craniofacial traits in outbred mice identifies major developmental genes involved in shape determination

Pallares, L. F., Carbonetto, P., Gopalakrishnan, S., Parker, C. C., Ackert-Bicknell, C. L., Palmer, A. A., et al. (2015). Mapping of craniofacial traits in outbred mice identifies major developmental genes involved in shape determination. PLoS Genetics, 11(11): e1005607. doi:10.1371/journal.pgen.1005607.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-0028-FD61-5 Version Permalink: http://hdl.handle.net/21.11116/0000-0004-CE91-0
Genre: Journal Article

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 Creators:
Pallares, Luisa F.1, Author              
Carbonetto, Peter, Author
Gopalakrishnan, Shyam, Author
Parker, Clarissa C., Author
Ackert-Bicknell, Cheryl L., Author
Palmer, Abraham A., Author
Tautz, Diethard1, Author              
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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Free keywords: Skull; mandible; quantitative trait loci, gene regulation; mammalian genomics, bone, genetic loci; bone resorption
 Abstract: The vertebrate cranium is a prime example of the high evolvability of complex traits. While evidence of genes and developmental pathways underlying craniofacial shape determination is accumulating, we are still far from understanding how such variation at the genetic level is translated into craniofacial shape variation. Here we used 3D geometric morphometrics to map genes involved in shape determination in a population of outbred mice (Carworth Farms White, or CFW). We defined shape traits via principal component analysis of 3D skull and mandible measurements. We mapped genetic loci associated with shape traits at ~80,000 candidate single nucleotide polymorphisms in ~700 male mice. We found that craniofacial shape and size are highly heritable, polygenic traits. Despite the polygenic nature of the traits, we identified 17 loci that explain variation in skull shape, and 8 loci associated with variation in mandible shape. Together, the associated variants account for 11.4% of skull and 4.4% of mandible shape variation, however, the total additive genetic variance associated with phenotypic variation was estimated in ~45%. Candidate genes within the associated loci have known roles in craniofacial development; this includes 6 transcription factors and several regulators of bone developmental pathways. One gene, Mn1, has an unusually large effect on shape variation in our study. A knockout of this gene was previously shown to affect negatively the development of membranous bones of the cranial skeleton, and evolutionary analysis shows that the gene has arisen at the base of the bony vertebrates (Eutelostomi), where the ossified head first appeared. Therefore, Mn1 emerges as a key gene for both skull formation and within-population shape variation. Our study shows that it is possible to identify important developmental genes through genome-wide mapping of high-dimensional shape features in an outbred population.

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Language(s): eng - English
 Dates: 2015-07-102015-09-242015-11-022015
 Publication Status: Published in print
 Pages: -
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 Table of Contents: -
 Rev. Method: Peer
 Identifiers: DOI: 10.1371/journal.pgen.1005607
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Project name : NewGenes
Grant ID : 322564
Funding program : NIH (GM097737)
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Title: PLoS Genetics
  Other : PLoS Genet.
Source Genre: Journal
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Publ. Info: San Francisco, CA : Public Library of Science
Pages: - Volume / Issue: 11 (11) Sequence Number: e1005607 Start / End Page: - Identifier: ISSN: 1553-7390
CoNE: /journals/resource/1000000000017180