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  Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Sali, A., Berman, H. M., Schwede, T., Trewhella, J., Kleywegt, G., Burley, S. K., et al. (2015). Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure, 23(7), 1156-1167. doi:10.1016/j.str.2015.05.013.

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Item Permalink: https://hdl.handle.net/11858/00-001M-0000-002A-40AE-A Version Permalink: https://hdl.handle.net/21.11116/0000-000B-9205-A
Genre: Journal Article

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 Creators:
Sali, Andrej1, Author
Berman, Helen M.2, Author
Schwede, Torsten3, Author
Trewhella, Jill4, Author
Kleywegt, Gerard5, Author
Burley, Stephen K. 2, 6, Author
Markley, John7, Author
Nakamura, Haruki 8, Author
Adams, Paul9, 10, Author
Bonvin, Alexandre M.J.J.11, Author
Chiu, Wah12, Author
Dal Peraro, Matteo13, Author
Di Maio, Frank14, Author
Ferrin, Thomas E. 15, Author
Grünewald, Kay16, Author
Gutmanas, Aleksandras5, Author
Henderson, Richard17, Author
Hummer, Gerhard18, Author                 
Iwasaki, Kenji19, Author
Johnson, Graham20, Author
Lawson, Catherine L. 2, AuthorMeiler, Jens21, AuthorMarti-Renom, Marc A.22, AuthorMontelione, Gaetano T.23, 24, AuthorNilges, Michael25, 26, AuthorNussinov, Ruth27, 28, AuthorPatwardhan, Ardan5, AuthorRappsilber, Juri29, 30, AuthorRead, Randy J.31, AuthorSaibil, Helen32, AuthorSchröder, Gunnar F.33, 34, AuthorSchwieters, Charles D.35, AuthorSeidel, Claus A.M.36, AuthorSvergun, Dmitri37, AuthorTopf, Maya32, AuthorUlrich, Eldon L.7, AuthorVelankar, Sameer5, AuthorWestbrook, John D.2, Author more..
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1Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, Byers Hall Room 503B, University of California, San Francisco, 1700 4th Street, San Francisco, CA 94158-2330, USA, ou_persistent22              
2Research Collaboratory for Structural Bioinformatics Protein Data Bank, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA, ou_persistent22              
3Swiss Institute of Bioinformatics Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056 Basel, Switzerland, ou_persistent22              
4School of Molecular Bioscience, The University of Sydney, NSW 2006, Australia, ou_persistent22              
5Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK, ou_persistent22              
6Skaggs School of Pharmacy and Pharmaceutical Sciences and San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA 92093, USA, ou_persistent22              
7BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706-1544, USA, ou_persistent22              
8Protein Data Bank Japan, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan, ou_persistent22              
9Physical Biosciences Division, Lawrence Berkeley Laboratory, Berkeley, CA 94720-8235, USA, ou_persistent22              
10Department of Bioengineering, UC Berkeley, Berkeley, CA 94720, USA, ou_persistent22              
11Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584 CH, the Netherlands, ou_persistent22              
12National Center for Macromolecular Imaging, Baylor College of Medicine, Houston, TX 77030, USA, ou_persistent22              
13Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, ou_persistent22              
14Department of Biochemistry, University of Washington, Seattle, WA 98195-7370, USA, ou_persistent22              
15Department of Pharmaceutical Chemistry and Department of Bioengineering and Therapeutic Sciences, California Institute for Quantitative Biosciences, University of California, San Francisco, 600 16th Street, San Francisco, CA 94158-2517, USA, ou_persistent22              
16Division of Structural Biology, Wellcome Trust Centre of Human Genetics, University of Oxford, OX3 7BN Oxford, UK, ou_persistent22              
17MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK, ou_persistent22              
18Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Max Planck Society, ou_2068292              
19Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan, ou_persistent22              
20Department of Bioengineering and Therapeutic Sciences, California Institute for Quantitative Biosciences, University of California, San Francisco, 600 16th Street, San Francisco, CA 94158-2330, USA, ou_persistent22              
21Department of Chemistry, Center for Structural Biology, Vanderbilt University, Nashville, TN 37235, USA, ou_persistent22              
22Genome Biology Group, Centre Nacional d’Ana` lisi Geno` mica (CNAG), Gene Regulation, Stem Cells and Cancer Program, Center for Genomic Regulation (CRG) and Institucio´ Catalana de Recerca i Estudis Avanc¸ ats (ICREA), 08028 Barcelona, Spain, ou_persistent22              
23Center for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA, ou_persistent22              
24Department of Biochemistry, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA, ou_persistent22              
25Département de Biologie Structurale et Chimie, Unité de Bioinformatique Structurale, Institut Pasteur, F-75015 Paris, France, ou_persistent22              
26Unité Mixte de Recherche 3258, Centre National de la Recherche Scientifique, F-75015 Paris, France, ou_persistent22              
27Cancer and Inflammation Program, Leidos Biomedical Research Inc., Frederick National Laboratory, National Cancer Institute, Frederick, MD 21702, USA, ou_persistent22              
28Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel, ou_persistent22              
29Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK, ou_persistent22              
30Department of Bioanalytics, Institute of Biotechnology, Technische Universita¨ t Berlin, 13355 Berlin, Germany, ou_persistent22              
31Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK, ou_persistent22              
32Institute of Structural and Molecular Biology, Department of Biological Sciences, Birkbeck College, Malet Street, London WC1E 7HX, UK, ou_persistent22              
33Institute of Complex Systems (ICS-6), Forschungszentrum Jülich, 52425 Jülich, Germany, ou_persistent22              
34Physics Department, Heinrich-Heine University Düsseldorf, 40225 Düsseldorf, Germany, ou_persistent22              
35Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, MD 20892-0520, USA, ou_persistent22              
36Chair for Molecular Physical Chemistry, Heinrich-Heine-Universität, Universitätsstraße 1, 40225 Düsseldorf, Germany, ou_persistent22              
37European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany, ou_persistent22              

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Free keywords: -
 Abstract: Structures of biomolecular systems are increasingly computed by integrative modeling that relies on varied types of experimental data and theoretical information. We describe here the proceedings and conclusions from the first wwPDB Hybrid/Integrative Methods Task Force Workshop held at the European Bioinformatics Institute in Hinxton, UK, on October 6 and 7, 2014. At the workshop, experts in various experimental fields of structural biology, experts in integrative modeling and visualization, and experts in data archiving addressed a series of questions central to the future of structural biology. How should integrative models be represented? How should the data and integrative models be validated? What data should be archived? How should the data and models be archived? What information should accompany the publication of integrative models?

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Language(s): eng - English
 Dates: 2015-06-182015-07-07
 Publication Status: Issued
 Pages: 12
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1016/j.str.2015.05.013
 Degree: -

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Title: Structure
  Other : Structure
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: London : Cell Press
Pages: - Volume / Issue: 23 (7) Sequence Number: - Start / End Page: 1156 - 1167 Identifier: ISSN: 0969-2126
CoNE: https://pure.mpg.de/cone/journals/resource/954927002244_1