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  Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function

Pattaro, C., Teumer, A., Gorski, M., Chu, A. Y., Li, M., Mijatovic, V., et al. (2016). Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function. NATURE COMMUNICATIONS, 7: 10023. doi:10.1038/ncomms10023.

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Pattaro, Cristian1, Author
Teumer, Alexander1, Author
Gorski, Mathias1, Author
Chu, Audrey Y.1, Author
Li, Man1, Author
Mijatovic, Vladan1, Author
Garnaas, Maija1, Author
Tin, Adrienne1, Author
Sorice, Rossella1, Author
Li, Yong1, Author
Taliun, Daniel1, Author
Olden, Matthias1, Author
Foster, Meredith1, Author
Yang, Qiong1, Author
Chen, Ming-Huei1, Author
Pers, Tune H.1, Author
Johnson, Andrew D.1, Author
Ko, Yi-An1, Author
Fuchsberger, Christian1, Author
Tayo, Bamidele1, Author
more..
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1external, ou_persistent22              
2Max Planck Institute of Psychiatry, Max Planck Society, ou_1607137              

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 Abstract: Reduced glomerular filtration rate defines chronic kidney disease and is associated with cardiovascular and all-cause mortality. We conducted a meta-analysis of genome-wide association studies for estimated glomerular filtration rate (eGFR), combining data across 133,413 individuals with replication in up to 42,166 individuals. We identify 24 new and confirm 29 previously identified loci. Of these 53 loci, 19 associate with eGFR among individuals with diabetes. Using bioinformatics, we show that identified genes at eGFR loci are enriched for expression in kidney tissues and in pathways relevant for kidney development and transmembrane transporter activity, kidney structure, and regulation of glucose metabolism. Chromatin state mapping and DNase I hypersensitivity analyses across adult tissues demonstrate preferential mapping of associated variants to regulatory regions in kidney but not extra-renal tissues. These findings suggest that genetic determinants of eGFR are mediated largely through direct effects within the kidney and highlight important cell types and biological pathways.

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Language(s): eng - English
 Dates: 2016-01
 Publication Status: Published online
 Pages: -
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 Identifiers: ISI: 000369032800001
DOI: 10.1038/ncomms10023
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Title: NATURE COMMUNICATIONS
Source Genre: Journal
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Pages: - Volume / Issue: 7 Sequence Number: 10023 Start / End Page: - Identifier: ISSN: 2041-1723